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nlist 0.5.0

Breaking changes

• tidy() now defaults to simplify = TRUE for the nlists, mcmc and mcmc.list methods (#61).

• Functions and arguments that were previously warn-deprecated are now defunct and error (#56):

  • is.natomic(), is.nlist() and is.nlists(), replaced by is_numeric(), is_nlist() and is_nlists().
  • as.nlist() and as.nlists(), replaced by as_nlist() and as_nlists().
  • aggregate.nlist() and aggregate.nlists(), replaced by estimates.nlist() and estimates.nlists().
  • The terms argument of pars(), replaced by terms::pars_terms(as_term(x)).
  • The iterations and parameters arguments of subset(), replaced by iters and pars.

New features

• tidy() gains a directional_information argument specifying whether the svalue column is calculated with extras::directional_information() instead of extras::svalue() (#51).
• The default value of directional_information is currently FALSE but will change to TRUE in a future release; leaving it unset is soft-deprecated.

Bug fixes

• subset.nlists() now range-checks the iters argument (#55).

Documentation

• Documented the sort() methods and added missing examples for the mcmc and mcmc.list methods (#60).
• Added return values to the documentation for the as_term() methods.

Minor improvements

• extras (>= 0.10.0) is now required.
• Replaced the deprecated structure() special names .Names, .Dim and .Dimnames with names, dim and dimnames, which R-devel now notes.

nlist 0.4.0

• Exported coda::as.mcmc.list.
• Added mcmcr as suggested dependency to removal speed bottleneck in as_nlists.mcmc() (#31, #44).
• No longer deprecate as.mcmc and as.mcmc.list (#43).
• Warn-deprecated all soft-deprecated functions.

nlist 0.3.3

• Speed up bind_iterations.mcmc.list() by replacing chk::chkor() with custom test and message.
• Fix pars.mcmc.list() so that no longer gives deprecation warning for terms = FALSE argument if not provided by user.
• Switch to testthat edition 3.

nlist 0.3.2

• Fixed complete_terms.mcmc() so now returns warning when silent = FALSE and invalid or inconsistent terms are dropped.

nlist 0.3.1

• Added as_nlists.mcmc.list().
• Added simplify = FALSE argument to tidy() and soft deprecated for simplify = TRUE so that replace sd, zscore and pvalue columns with svalue.

nlist 0.3.0

Added - collapse_chains() for mcmc and mcmc.list objects. - pars<- Soft deprecated - as.mcmc.list() for as_mcmc_list(). - as.mcmc() for as_mcmc().

nlist 0.2.0

Breaking changes

• Set Depends to R >= 3.4
• Replaced pars_scalar() and npars_scalar() with pars(scalar = TRUE) and npars(scalar = TRUE).

Soft deprecated

• pars(terms =) for pars_terms(as_term()).
• is.natomic() for is_numeric().
• is.nlist() and is.nlists() for is_nlist() and is_nlists().
• as.nlist() and as.nlists() for as_nlist() and as.nlists().
• as.term() for as_term().

Features

Added

• thin.default() to thin objects.
• unlist_nlist() (also unlist.nlist()) and relist_nlist() to flatten and pop nlist objects.
• as_data_term() and as_data_term() for nlist and nlists objects.
• fill_all() and fill_na() for nlist and nlists objects.
• set_pars() for nlist and nlists objects.
• tidy.nlists() for nlists objects.

nlist 0.1.1

• Fix tests ready for term 0.2.0.

nlist 0.1.0

• Added fill_na() for natomic, nlist and nlists objects.
• Added as.nlist.numeric() to convert flattened nlist objects back into original objects.
• Added unlist_nlist() (also unlist.nlist()) and relist_nlist() to flatten and pop nlist objects.

nlist 0.0.1

• Initial release.

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They may not be fully stable and should be used with caution. We make no claims about them.
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