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Added checks within NUTS
and NUTS_classic
samplers to check validity of target nodes.
Testing of correct results of HMC samplers on CAR model structures.
NUTS
and NUTS_classic
samplers updated consistent with version 1.1.0 of nimble
.
Renamed HMC
sampler to NUTS_classic
, and added NUTS
HMC sampler which follows the implementation of version 2.32.2 of Stan.
Replaced nwarmup
control argument to HMC samplers with the new warmupMode
control argument. This provides four distinct methods of choosing the number of HMC warmup iterations.
configureHMC
for sampler assignment to posterior predictive nodes.Initial release of nimbleHMC
package. Initial version provides:
Hamiltonian Monte Carlo (HMC) sampler for use with nimble
package MCMC engine.
Convenience functions addHMC
, configureHMC
, buildHMC
and nimbleHMC
, for managing MCMC configuration objects with HMC samplers.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.