neutralitytestr: Test for a Neutral Evolutionary Model in Cancer Sequencing Data

Package takes frequencies of mutations as reported by high throughput sequencing data from cancer and fits a theoretical neutral model of tumour evolution. Package outputs summary statistics and contains code for plotting the data and model fits. See Williams et al 2016 <doi:10.1038/ng.3489> and Williams et al 2017 <doi:10.1101/096305> for further details of the method.

Version:	0.0.3
Depends:	R (≥ 3.4)
Imports:	dplyr, ggplot2, scales, pracma, ggpmisc, cowplot
Suggests:	knitr, rmarkdown, testthat
Published:	2021-02-16
DOI:	10.32614/CRAN.package.neutralitytestr
Author:	Marc Williams [aut, cre]
Maintainer:	Marc Williams <marcjwilliams1 at gmail.com>
BugReports:	https://github.com/marcjwilliams1/neutralitytestr/issues
License:	MIT + file LICENSE
URL:	https://github.com/marcjwilliams1/neutralitytestr
NeedsCompilation:	no
Materials:	README NEWS
CRAN checks:	neutralitytestr results

Documentation:

Reference manual:	neutralitytestr.pdf
Vignettes:	neutralitytestr: Testing a neutral evolutionary model on cancer sequencing data

Downloads:

Package source:	neutralitytestr_0.0.3.tar.gz
Windows binaries:	r-devel: neutralitytestr_0.0.3.zip, r-release: neutralitytestr_0.0.3.zip, r-oldrel: neutralitytestr_0.0.3.zip
macOS binaries:	r-release (arm64): neutralitytestr_0.0.3.tgz, r-oldrel (arm64): neutralitytestr_0.0.3.tgz, r-release (x86_64): neutralitytestr_0.0.3.tgz, r-oldrel (x86_64): neutralitytestr_0.0.3.tgz
Old sources:	neutralitytestr archive

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