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Install and start the latest release version of R. Although the installer will try to download and install devtools
, there may be some system requirements for devtools
that you may need before going forward.
Then, you can install a package using the following command:
## try http:// if https:// URLs are supported
source("https://neuroconductor.org/neurocLite.R")
neuro_install("PACKAGE")
where PACKAGE
is the name of the package you’d like to install, such as fslr
. For example, if we want to install neurohcp
and fslr
we can run:
neurocLite
: an alias for neuroc_install
As Bioconductor uses the biocLite
function to install packages, we have created a duplicate of neuro_install
, called neurocLite
, for ease of use for those users accustomed to Bioconductor. The same command could have been executed as follows:
neurocInstall
packageThe neurocInstall
package contains the neurocLite
/neuro_install
functions, as well as others relevant for Neuroconductor. You can install the package as follows:
After installation, you can use neurocInstall::neuroc_install()
to install packages without having to source the URL above.
The neurocLite
/neuro_install
functions depend on devtools::install_github
, which will upgrade dependencies by default, which is recommended. If you would like to install a package, but not upgrade the dependencies (missing dependencies will still be installed), you can set the upgrade_dependencies
argument to FALSE
:
Download the most recent version of R from https://cran.r-project.org/. There are detailed instructions on the R website as well as the specific R installation for the platform you are using, typically Linux, OSX, and Windows.
Start R; we recommend using R through RStudio. You can start R using RStudio (Windows, OSX, Linux), typing “R” at in a terminal (Linux or OSX), or using the R application either by double-clicking on the R application (Windows and OSX).
For learning R, there are many resources such as Try-R at codeschool and DataCamp.
If a package is not in the Neuroconductor list of packages, then it is not located on the Neuroconductor Github. Therefore, when installing, you’ll get the following error:
Error in neuro_install(...) :
Package(s) PACKAGE_TRIED_TO_INSTALL are not in neuroconductor
Once a package is located on the list of packages, then it will be available to install.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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