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nandb: Number and Brightness Image Analysis

Calculation of molecular number and brightness from fluorescence microscopy image series. The software was published in a 2016 paper <doi:10.1093/bioinformatics/btx434>. The seminal paper for the technique is Digman et al. 2008 <doi:10.1529/biophysj.107.114645>. A review of the technique was published in 2017 <doi:10.1016/j.ymeth.2017.12.001>.

Version: 2.1.0
Depends: R (≥ 3.1)
Imports: assertthat, autothresholdr (≥ 1.3.11), BBmisc, checkmate (≥ 1.9.3), detrendr (≥ 0.6.12), dplyr, filesstrings (≥ 3.2), ggplot2, glue (≥ 1.3), ijtiff (≥ 2.2), magrittr (≥ 1.5), purrr, Rcpp (≥ 1.0.1), reshape2, rlang (≥ 0.3.3), stringr (≥ 1.4), utils, viridis, withr (≥ 2.1.0)
LinkingTo: Rcpp (≥ 1.0.1)
Suggests: abind, covr, gridExtra, knitr, matrixStats (≥ 0.50), pacman, rmarkdown, spelling, testthat (≥ 2.1), tidyr
Published: 2021-05-16
DOI: 10.32614/CRAN.package.nandb
Author: Rory Nolan ORCID iD [aut, cre, cph], Luis Alvarez ORCID iD [ctb, cph], Sergi Padilla-Parra ORCID iD [ctb, ths, cph]
Maintainer: Rory Nolan <rorynoolan at gmail.com>
BugReports: https://github.com/rorynolan/nandb/issues
License: BSD_3_clause + file LICENSE
URL: https://rorynolan.github.io/nandb/, https://github.com/rorynolan/nandb
NeedsCompilation: yes
Language: en-US
Citation: nandb citation info
Materials: README NEWS
CRAN checks: nandb results

Documentation:

Reference manual: nandb.pdf
Vignettes: Batch mode
Brightness timeseries
Calculating brightness with single images

Downloads:

Package source: nandb_2.1.0.tar.gz
Windows binaries: r-devel: nandb_2.1.0.zip, r-release: nandb_2.1.0.zip, r-oldrel: nandb_2.1.0.zip
macOS binaries: r-release (arm64): nandb_2.1.0.tgz, r-oldrel (arm64): nandb_2.1.0.tgz, r-release (x86_64): nandb_2.1.0.tgz, r-oldrel (x86_64): nandb_2.1.0.tgz
Old sources: nandb archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=nandb to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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