nandb: Number and Brightness Image Analysis
Calculation of molecular number and brightness from fluorescence microscopy image series. The software was published in a 2016 paper <doi:10.1093/bioinformatics/btx434>. The seminal paper for the technique is Digman et al. 2008 <doi:10.1529/biophysj.107.114645>. A review of the technique was published in 2017 <doi:10.1016/j.ymeth.2017.12.001>.
| Version: | 2.1.0 |
| Depends: | R (≥ 3.1) |
| Imports: | assertthat, autothresholdr (≥ 1.3.11), BBmisc, checkmate (≥ 1.9.3), detrendr (≥ 0.6.12), dplyr, filesstrings (≥ 3.2), ggplot2, glue (≥ 1.3), ijtiff (≥ 2.2), magrittr (≥ 1.5), purrr, Rcpp (≥ 1.0.1), reshape2, rlang (≥ 0.3.3), stringr (≥ 1.4), utils, viridis, withr (≥ 2.1.0) |
| LinkingTo: | Rcpp (≥ 1.0.1) |
| Suggests: | abind, covr, gridExtra, knitr, matrixStats (≥ 0.50), pacman, rmarkdown, spelling, testthat (≥ 2.1), tidyr |
| Published: | 2021-05-16 |
| Author: | Rory Nolan  [aut,
cre, cph],
Luis Alvarez
[ctb, cph],
Sergi Padilla-Parra
[ctb, ths,
cph] |
| Maintainer: | Rory Nolan <rorynoolan at gmail.com> |
| BugReports: | https://github.com/rorynolan/nandb/issues |
| License: | BSD_3_clause + file LICENSE |
| URL: | https://rorynolan.github.io/nandb/, https://github.com/rorynolan/nandb |
| NeedsCompilation: | yes |
| Language: | en-US |
| Citation: | nandb citation info |
| Materials: | README NEWS |
| CRAN checks: | nandb results |
Documentation:
| Reference manual: | nandb.pdf |
| Vignettes: |
Batch mode Brightness timeseries Calculating brightness with single images |
Downloads:
| Package source: | nandb_2.1.0.tar.gz |
| Windows binaries: | r-devel: nandb_2.1.0.zip, r-release: nandb_2.1.0.zip, r-oldrel: nandb_2.1.0.zip |
| macOS binaries: | r-release (arm64): nandb_2.1.0.tgz, r-oldrel (arm64): nandb_2.1.0.tgz, r-release (x86_64): nandb_2.1.0.tgz, r-oldrel (x86_64): nandb_2.1.0.tgz |
| Old sources: | nandb archive |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=nandb to link to this page.