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mvSLOUCH: Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses

Fits multivariate Ornstein-Uhlenbeck types of models to continues trait data from species related by a common evolutionary history. See K. Bartoszek, J, Pienaar, P. Mostad, S. Andersson, T. F. Hansen (2012) <doi:10.1016/j.jtbi.2012.08.005>. The suggested PCMBaseCpp package (which significantly speeds up the likelihood calculations) can be obtained from <https://github.com/venelin/PCMBaseCpp/>.

Version: 2.7.6
Depends: R (≥ 3.5.0), abind
Imports: ape (≥ 5.3), graphics, methods, mvtnorm, Matrix, ouch, PCMBase (≥ 1.2.10), stats, matrixcalc
Suggests: PCMBaseCpp (≥ 0.1.9), ggplot2, knitr, rmarkdown, mvMORPH, testthat
Published: 2023-11-20
DOI: 10.32614/CRAN.package.mvSLOUCH
Author: Krzysztof Bartoszek [cre, aut], John Clarke [ctb], Jesualdo Fuentes-Gonzalez [ctb], Jason Pienaar [ctb]
Maintainer: Krzysztof Bartoszek <krzbar at protonmail.ch>
License: GPL-2 | GPL-3 | file LICENCE [expanded from: GPL (≥ 2) | file LICENCE]
NeedsCompilation: no
Citation: mvSLOUCH citation info
CRAN checks: mvSLOUCH results

Documentation:

Reference manual: mvSLOUCH.pdf
Vignettes: Getting started

Downloads:

Package source: mvSLOUCH_2.7.6.tar.gz
Windows binaries: r-devel: mvSLOUCH_2.7.6.zip, r-release: mvSLOUCH_2.7.6.zip, r-oldrel: mvSLOUCH_2.7.6.zip
macOS binaries: r-release (arm64): mvSLOUCH_2.7.6.tgz, r-oldrel (arm64): mvSLOUCH_2.7.6.tgz, r-release (x86_64): mvSLOUCH_2.7.6.tgz, r-oldrel (x86_64): mvSLOUCH_2.7.6.tgz
Old sources: mvSLOUCH archive

Reverse dependencies:

Reverse imports: pcmabc
Reverse suggests: GLSME, PCMBase

Linking:

Please use the canonical form https://CRAN.R-project.org/package=mvSLOUCH to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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