The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
+ fix type for integer in C header file+ update tolerance value for mvgls tuning parameter search
+ changes to Fortran routines calls following CRAN policies
+ wrapper to BIC+ reverse change for zero branch lengths in "penalized" file. A typo was introduced. Now a check is performed first in the "mvgls" function.+ add the pcaShape and dfaShape functions
+ add wrapper "simulate()" to simulate from 'mvgls' or 'mvols' fit
+ fix error in "estim" for BM with trend
+ fix issues with zero branch lengths in the pruning algorithm used in 'mvgls'
+ fix typo on factor labels in DFA predictions
+ fix CRAN requests (typo on Rd file and arguments in error function in C code)+ fix error in handling pairwise glh tests with the "effectSize" function
+ fix error in mvols with EIC - no use of the pruning algorithm now
+ add ploting option for pairwise tests
+ add AIC extractor+ fix error in the estimation of GIC with "BMM" model in mvgls. Now the 'mvgls' function uses a more robust parameterization of BMM which ease the computation of GIC.
+ mvols function - wrapper to mvgls to fit OLS (or WLS) multivariate models (possibly regularized)+ mvqqplot (multivariate normality and outliers assessment - beta)
+ effectsize (multivariate measures of association - beta)
+ pairs.contrasts (build a matrix of pairwise contrasts)
+ pairwise.glh (performs multivariate pairwises tests)
+ predict.mvgls.dfa (predict option for DFA - beta)
+ manova.gls (implements now contrasts for repeated measures designs)
+ fix error in estim
+ add "ancestral" function to estimate ancestral states for mvgls objects+ model BMM in mvgls
+ "predict" function for mvgls
+ plot function for mvgls objects
+ dfa on gls fit (beta)
+ fix typo in mvSHIFT output print
+ fix error in estimation of OU with n-ultrametric trees in mvgls + new adjusted bounds for parameters search
+ fix typo in summary.mvgls print option in the calculation of the AIC.
+ handling of design matrices with deficient ranks in regressions+ CRAN request to remove the export statements for S3 classes
+ replace is.binary.tree to is.binary.phylo, the former being deprecated from "ape".
+ fix error in mvSHIFT. The wrong values were returned (but not printed) for "beta" in BMEB models.+ replaced "F" by "FALSE" in example files to follow CRAN policies
+ optimization of some diagonal matrices computations
+ bug fix in mvSIM (SHIFT model without simmap tree provided)+ update help pages of various functions
+ Bugs fixes for bounds in the parameter search in "mvgls", and missing values estimation in "estim" with OU1 model.
+ manova.gls: MANOVA methods and multivariate statistics based on ML (n<p) and PL (any p) model fit.
+ Phyllostomid dataset from Monteiro & Nogueira (2011)
+ EIC: function to compute the EIC score for both ML and PL techniques (class mvgls)+ mvgls: a multivariate GLS function based on ML (n<p) and PL (any p).
+ mvgls.pca: a function to perform PCA on serially correlated data.
+ GIC: function to compute the GIC score for both ML and PL techniques (class mvgls)
+ suite of functions to use with mvgls
+ Bug fix for "mvSIM" with sparse methods and speed-up for "BM1" model.
+ Typo fix in testLRT
+ Typo fix in weight-matrix-mvmorph.c (indexing of variable)
+ add options for the pruning algorithm.
+ fix error with NA values for the mvOU function.+ Registration of compiled codes
+ New pruning algorithm to compute the determinant and square root matrix
+ Bugs fixes in "estim" for ancestral state reconstructions with OU models and "smean=FALSE" option.
+ Bug fix for "estim" with univariate data.
+ Corrected bug in mvSIM.
+ Fix bug with matrix parametrization "equaldiagonal".
+ add the "svd" option for simulating traits in mvSIM.
+ Bug fix in "mvEB".+ Allows estimating the missing cases (NA)
+ Allows estimating trends
+ User defined constrained models and parameterizations
+ Return the log-likelihood function
+ Simulating traits on package vignette
+ Multivariate models for time-series (TS)
+ Partial implementation of a tests-suiteThese binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.