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Check concordance of a vector of mutation impacts with standard dictionaries such as Sequence Ontology (SO) <http://www.sequenceontology.org/>, Mutation Annotation Format (MAF) <https://docs.gdc.cancer.gov/Encyclopedia/pages/Mutation_Annotation_Format_TCGAv2/> or Prediction and Annotation of Variant Effects (PAVE) <https://github.com/hartwigmedical/hmftools/tree/master/pave>. It enables conversion between SO/PAVE and MAF terms and selection of the most severe consequence where multiple ampersand (&) delimited impacts are given.
Version: | 0.0.1 |
Imports: | assertions, cli, data.table, stats, utils |
Suggests: | covr, testthat (≥ 3.0.0) |
Published: | 2023-12-14 |
DOI: | 10.32614/CRAN.package.mutationtypes |
Author: | Sam El-Kamand |
Maintainer: | Sam El-Kamand <sam.elkamand at gmail.com> |
BugReports: | https://github.com/selkamand/mutationtypes/issues |
License: | LGPL (≥ 3) |
URL: | https://github.com/selkamand/mutationtypes |
NeedsCompilation: | no |
Materials: | README |
CRAN checks: | mutationtypes results |
Reference manual: | mutationtypes.pdf |
Package source: | mutationtypes_0.0.1.tar.gz |
Windows binaries: | r-devel: mutationtypes_0.0.1.zip, r-release: mutationtypes_0.0.1.zip, r-oldrel: mutationtypes_0.0.1.zip |
macOS binaries: | r-release (arm64): mutationtypes_0.0.1.tgz, r-oldrel (arm64): mutationtypes_0.0.1.tgz, r-release (x86_64): mutationtypes_0.0.1.tgz, r-oldrel (x86_64): mutationtypes_0.0.1.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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