The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
tinytable,
parameters, and insight dependencies.coef_rename() gets a poly=TRUE argument to
rename poly(x, 2)-style coefficients. Thanks to @mccarthy-m-g for code
contribution #778.get_gof(): logLik column converted to
numeric for consistent types. Issue 649 reported on the
mice Github.kableExtra update the siunitx commands for
d columns.kableExtra escapes footnotes in HTML when
output="kableExtra"). Thanks to @dmurdoch and @michaelherndon97 for report
#793.fmt_equivalence() function to implement the
rounding suggestion of Astier & Wolak (2024). Thanks to Nicolas
Astier for code prototype.datasummary_*()
tables. No change in behavior. Thanks to @fkohrt for report #804.Bugs:
datasummary_*() functions can be called as arguments in
another datasummary_*() arguments, like
add_columns. Thanks to @mronkko for report #799caption instead of
title. Inconsistency with respect to
tinytable.title argument.htest workaround.Bugs:
datasummary_correlation() respects the
escape argument. Issue #772.datasummary_correlation() supports
data.table objects. Issue #771.New:
modelsummary() gets a gof_function
argument which accepts functions to extract custom information from
models.flextable: Support spanning column headersdatasummary_correlation() gets a star
argument.datasummary_correlation() accepts objects produced by
the correlation package.datasummary_balance(): formula can now
include variables on the left-hand side to indicate the subset of
columns to summarize:
datasummary_balance(mpg + hp ~ am, data = mtcars) Thanks to
@etiennebacher
for feature request #751.tinytable 0.3.0Bugs:
escape argument not respected in
datasummary_df(). Thanks to @adamaltmejd for report #740datasummary_correlation() supports
data.table. Thanks to volatilehead on Twitter for report
#737.estimate argument when using shape and
statistics are horizontal. Thanks to @iago-pssjd for report #745.datasummary(). Thanks to @marklhc for report #752.coef_map does not work when there is a
group. Thanks to @mccarthy-m-g for report #757.kableExtra: fix spanning column headers when using the
shape argument.tinytable output. Thanks toMAJOR BREAKING CHANGE: The default output format is now
tinytable instead of kableExtra. Learn more
about tinytable here:
https://vincentarelbundock.github.io/tinytable/
To revert to the previous behavior persistently, users can call:
library(modelsummary) config_modelsummary(factory_default = “kableExtra”)
Other breaking changes:
statistic_override argument was replaced by
vcov over 1 year ago, with appropriate deprecation
warnings. It is now fully removed.group argument was replaced by shape
several releases ago. It is now fully removed.datasummary_skim()
tinytable
backend. This allows a lot of code simplification and more
customization.type and output is
switched for consistency with other functions.histogram argument is deprecated.New features:
datasummary_skim():
type="all" by default to display both numeric and
categorical variables in a single table with distinct panels. This
feature is only available with the tinytable backend
(default).by argument allows summarizing numeric variables by
group.fun_numeric argument accepts a list of functions to
control the summary columns.modelsummary():
statistic and estimate can be specified as
named vectors to control the names of statistics when displayed in
different columns using the shape argument. (Thanks to
@mps9506 for bug
report #722)modelsummary(panels, shape = "cbind") automatically
adds column-spanning labels when panels is a named nested
list of models.config_modelsummary() gets a
startup_message argument to silence the startup message
persistently.Bug fixes:
modelplot()
calls. Thanks to @iago-pssjd for the report and @florence-laflamme for the
fix.tinytable supports histograms in
datasummary_skim()config_modelsummary() supports tinytable
factory.tinytable package as an output format
(“factory”): https://vincentarelbundock.github.io/tinytable/md output format is recognized.options(modelsummary_factory_default) is respected,
even in qmd->md documents.Bugs:
I() operator in
formulas. Issue #693.Misc:
shape groups are removed
automatically for cleaner labels.Bugs:
kableExtra. Issue #669.New:
Typst output, with auto-detection
in Quarto documents.strip argument in dvnames.s.value statistic is now available whenever
p.value is available. See Greenland (2019).datasummary_skim() now includes histograms in
gt tables.Bugs:
furrr generated errors for some models.
Thanks to @sammo3182 for Issue #647.New:
fmt_sci() can now be used in the fmt
argument for rounding with scientific notation.Bugs:
add_rows with
shape="rbind". Thanks to @lrose1 for Report #626.shape and grouped
estimates. Thanks to @iago-pssjd for Report #631.coef_rename=TRUE bug with grouped estimates. Thanks to
@iago-pssjd for
Report #631.parameters meant that
vcov was no longer used for confidence intervals.kableExtra. Recommends an
additional install for other formats.config_modelsummary(factory_default = "gt")shape = "rcollapse" and
shape = "rbind"glance_custom() can drop GOF by assigning
NA:
https://stackoverflow.com/questions/75215355/assigning-different-coefficient-names-and-goodness-of-fit-statistics-to-differenstatistic is not available,
modelsummary prints an empty cell instead of returning an
error.title even when
escape=TRUEfixest_multi objects supported.options(modelsummary_future = FALSE) disables
future parallelism.Bug fixes:
statistic=NULL is now respected when
shape="rbind". Thanks to Panos Mavros for report #620.get_estimates() supports vcov string
shortcuts and formulas. Thanks to @ethans-carl for report #605.situnix in
header automatically for decimal alignement with
align="ddd"escape is now respected by modelsummary
with shape="rbind". Thanks to @chickymonkeys for report #622.Breaking change:
modelsummary() has
changed from “Model 1” to “(1)”. The benefits are: labels are no longer
in English by default; use less horizontal space; eliminate the “Model”
redundancy. Unfortunately, this could break code in some edge cases
where users rely on column names to manipulate tables. The old behavior
can be restored by calling:
options(modelsummary_model_labels="model")New features:
shape="rbind" to stack multiple regression tables and
create “panels” with labelled groups of models.fmt: new helper functions for different formatting
styles
fmt = fmt_decimal(2): decimal digitsfmt = fmt_decimal(digits = 2, pdigits = 4): decimal
digits with p value-specific settingfmt = fmt_sprintf("%.3f"): sprintf()
decimalfmt = fmt_sprintf("%.3e"): sprintf()
scientificfmt = fmt_significant(3): significant digitsfmt = fmt_statistic("estimate" = 2, "std.error" = 3):
statistic-specific formattingfmt = fmt_term("(Intercept)" = 2, "hp" = 3):
term-specific formattingfmt = fmt_identity(): raw valuesmodelsummary,
such as Roman Numerals or letters in parentheses.
options(modelsummary_model_labels = "roman")modelplot(draw = FALSE) now returns a
p.value column. This allows conditional aesthetics (see the
modelplot vignette).marginaleffects
package.Bugs:
fixest models returns useless “group.x” and
“group.y” columns. Isse #591. Thanks to Adam Altmejd for the
report.Breaking change:
shape and output="dataframe"
arguments, there always used to be a group column. Now,
this column has the same name as the variable in the shape
formula (“response”, “component”, etc.).New features:
shape can include multiple groups.coef_rename can be an unnamed vector of length equal to
the number of terms in the final table, obtained after
coef_map and coef_omit are applied and models
are merged.coef_omit accepts numeric indices. Positive values:
coefficients to omit. Negative values: coefficients to keep.datasummary_skim: Increased maximum number of variables
to 250.Bug fixes:
Breaking change:
siunitx version 3.0.25 LaTeX package.title argument now respects the escape
argument for all kableExtra output formats. This can break
tables in which users manually escaped titles.New features:
align
argument for all output formats.
modelsummary(mod, align = "ld")update_modelsummary() function makes it easy to
install the dev versions of modelsummary and its
dependencies (mostly useful for Vincent and people who report
bugs).haven labels in
modelsummary(), datasummary(),
datasummary_skim()output = "filename.csv"output = "filename.xlsx"add_columns argument supported in
modelsummary()datasummary_balance supports the stars
argument.align = "d"
column.Bug fixes:
shape argument accepts interactions with the colon “:”
character. This combines two columns into one, which can be useful to
display terms and group names in a single column.parallel::mclapply. See
?modelsummarymodelsummary no longer computes confidence intervals
when not necessary, which can save some time. Also see:
conf_level=NULLThis first major release accompanies the publication of an article in the Journal of Statistical Software:
Arel-Bundock, Vincent (2022). “modelsummary: Data and Model Summaries in R.” Journal of Statistical Software, 103(1), 1-23. doi:10.18637/jss.v103.i01 https://doi.org/10.18637/jss.v103.i01.’
If you like modelsummary, please cite the JSS article
and tell your friends about it.
Minor changes:
gof_map="all" includes all available statistics.
gof_map="none" excludes all statistics.diagnostic=NULL and test=NULL by default for
speed.Breaking changes:
modelsummary_wide is no longer available. Use the
shape argument of modelsummary instead.modelsummary now uses the easystats
packages (performance and parameters) to
extract estimates and goodness-of-fit statistics instead of
broom. This can be reverted by setting a global option:
options(modelsummary_get="broom"). This change aims to (1)
increase consistency across models, (2) improve the developers’ ability
to push bug fixes upstream when necessary, and (3) improve support for
mixed effects, bayesian, and GAM models. The two main drawbacks are: (a)
The set of printed statistics may be slightly different from previous
versions of modelsummary (b) The group identifiers used in
the shape formula will also be different for certain models
(e.g., in nnet::multinom, y.level becomes
response).New features:
shape argument accepts a formula and can reshape
information in myriad ways. Deprecates the group argument.
Examples:
~ statistic: statistics are shown horizontally in
distinct columns.model ~ term: models in rows and terms in columns.term + y.level + statistic ~ model: grouped
coefficients for multivariate outcome in
nnet::multinomy.level ~ model: partial match is the same as the
previous formulafmt:
modelsummary(mod, fmt = list(estimate = 2, std.error = 1, rmse = 4))glue to apply functions to numeric values by
setting fmt = NULL. Example:
modelsummary(model, fmt = NULL, estimate = "{log(estimate)}")Bug fixes:
group_map rename issuelm models.datasummary_skim output to jpg should now worksescape fixesexponentiate argument for
modelsummary() and modelplot()gof_map accepts a vector such as
c("rmse", "nobs", "r.squared")rlang dependencydatasummary_balance:
~ 1 as a formula to summarize all data.Misc:
lmmodelsummary:
vcov strings like HC1 and
Robust are now case-insensitivegof_map now accepts a data.frame or tibble with a
fmt list-column which includes functions (see Examples in
docs)R2 is no longer computed by default for bayesian and
mixed effects models. An informative one-time warning is printed about
the metrics argument.datasummary_skim:
kableExtra factory:
col.names argument can now be passed to
kableExtra::kbl through the … ellipsis.Misc:
output = "github_document" is now supportedmodelsummary:
vcov argumentdatasummary_balance:
Misc:
modelsummary:
vcov argument handling for fixest
models (#357 by @grantmcdermott)fixest::i() variables and interactions
(#361 by @grantmcdermott)datasummary_correlation:
add_rows and add_columns arguments are now
available here.Misc:
modelsummary_factory_default,
modelsummary_factory_html, etc.intersectBug fixes:
datasummary_balance: escape variable names when
escape=TRUEBreaking change:
dcolumn for dot-aligned columns is
deprecated. Use “d” in the align argument instead.Other changes:
\num{}
function from the siunitx package by default. This produces
much nicer formatting. This can be disabled with a global option. See
?modelsummaryalign argument accepts a “d” column for
dot-alignment using the siunitx LaTeX package:
align="ldd".escape argument in most table-building
functions.threeparttable=TRUE argument
through ...tidyrmodelsummary:
group: The order of terms in the formula determines the
order of rows/columnsmodelsummary_wide:
modelplot:
datasummary_crosstab:
statistic=NULL produces a very basic crosstabdatasummary_crosstab:
modelsummary:
options("modelsummary_stars_note" = FALSE)longtable=TRUE works for LaTeX outputcoef_map or coef_rename are used.group = model ~ term + group is now supported.datasummary_skim:
datasummary_skim("categorical") keeps NA
by default. Users can convert variables to factors before calling
datasummary_skim to exclude NA.Other:
modelsummary(model1, model2)gt titles use the new caption argument in
the gt 0.3.0 functionBreaking change:
stars=TRUE have been
updated to be consistent with the default output from base R (e.g., in
summary.lm). The new significance thresholds are: “+” p < 0.1, “”
p < 0.05, ”” p < 0.01, ”” p < 0.001datasummary_crosstab:
datasummary:
N is smart enough to return either the number of
elements in a subset or the number of non-missing observations in a
variabledatasummary_balance:
NAs in factor variables by default. Users can
convert their variables with the factor() function to omit
NAs automatically.modelsummary:
get_gof (glance) is now
optional.sandwich, which allows things
like:
modelsummary(model, vcov = "bootstrap", R = 1000, cluster = "firm")Other:
output="jupyter"modelsummary:
modelsummary: group and
group_map for grouped parameters (e.g., outcome levels in
multinomial logit or components of gamlss model).dvnames() makes it easy to get dependent variable
column titles (thanks to @NickCH-K)output="modelsummary_list" to save a lightweight
list-based representation of the table which can be saved and fed to
modelsummary once more to get a full table.vcov adds a row to note the type of standard
errors.modelsummary accepts a single model with multiple
vcovs.get_gof forwards … to
model_performancecoef_map accepts unnamed vectors for easy
subsettingfixest::fixest_multi supportoptions(modelsummary_get) to set the order of
extraction functions to use under the hood (broom vs. easystats
vs. all)metrics argument of
performance::model_performance is available via
modelsummary’s … ellipsis to limit the GOF statistics in
Bayesian models.estimate="{estimate}{stars}"gt by setting
options(modelsummary_factory_html="gt")datasummary_correlation:
... forwarddatasummary_correlation_formatdatasummary_correlation’s method argument
accepts functions and “pearspear” (thanks to @joachim-gassen)datasummary:
datasummary functions and rounding accept
…, big.mark, etc.datasummary_skim:
Bug fixes and lints
tidy_custom allows partial term matchesmodelsummary(coef_rename) accepts functionscoef_rename for use in
modelsummary(coef_rename=coef_rename)modelplot accepts add_rows to add
reference categoriesstatistic_override becomes vcovestimate and
statisticextract is no longer
documented.threeparttable, colors, and many other
LaTeX optionspkgdown website and doc improvementsmitools tidiersThese binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.