The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
Pipeline for Genome-Wide Association Study using Multi-Locus Mixed Model from Segura V, Vilhjálmsson BJ et al. (2012) <doi:10.1038/ng.2314>. The pipeline include detection of associated SNPs with MLMM, model selection by lowest eBIC and p-value threshold, estimation of the effects of the SNPs in the selected model and graphical functions.
| Version: | 1.0.6 |
| Depends: | R (≥ 3.3.0) |
| Imports: | multcompView (≥ 0.1-7), multcomp (≥ 1.4-8), coxme (≥ 2.2-5), sommer (≥ 3.2), Matrix (≥ 1.2-10) |
| Suggests: | knitr, rmarkdown |
| Published: | 2019-08-05 |
| DOI: | 10.32614/CRAN.package.mlmm.gwas |
| Author: | Fanny Bonnafous [aut], Alexandra Duhnen [aut], Louise Gody [aut], Olivier Guillaume[aut, cre], Brigitte Mangin [aut], Prune Pegot-Espagnet [aut], Vincent Segura [aut], Bjarni J. Vilhjalmsson [aut], Clement Mabire [aut], Timothee Flutre [aut] |
| Maintainer: | Clement Mabire <clement.mabire at inra.fr> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Materials: | NEWS |
| In views: | Agriculture |
| CRAN checks: | mlmm.gwas results |
| Reference manual: | mlmm.gwas.pdf |
| Vignettes: |
GWAS pipeline manual |
| Package source: | mlmm.gwas_1.0.6.tar.gz |
| Windows binaries: | r-devel: mlmm.gwas_1.0.6.zip, r-release: mlmm.gwas_1.0.6.zip, r-oldrel: mlmm.gwas_1.0.6.zip |
| macOS binaries: | r-release (arm64): mlmm.gwas_1.0.6.tgz, r-oldrel (arm64): mlmm.gwas_1.0.6.tgz, r-release (x86_64): mlmm.gwas_1.0.6.tgz, r-oldrel (x86_64): mlmm.gwas_1.0.6.tgz |
| Old sources: | mlmm.gwas archive |
Please use the canonical form https://CRAN.R-project.org/package=mlmm.gwas to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.