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Pipeline for Genome-Wide Association Study using Multi-Locus Mixed Model from Segura V, Vilhjálmsson BJ et al. (2012) <doi:10.1038/ng.2314>. The pipeline include detection of associated SNPs with MLMM, model selection by lowest eBIC and p-value threshold, estimation of the effects of the SNPs in the selected model and graphical functions.
| Version: | 1.0.6 |
| Depends: | R (≥ 3.3.0) |
| Imports: | multcompView (≥ 0.1-7), multcomp (≥ 1.4-8), coxme (≥ 2.2-5), sommer (≥ 3.2), Matrix (≥ 1.2-10) |
| Suggests: | knitr, rmarkdown |
| Published: | 2019-08-05 |
| Author: | Fanny Bonnafous [aut], Alexandra Duhnen [aut], Louise Gody [aut], Olivier Guillaume[aut, cre], Brigitte Mangin [aut], Prune Pegot-Espagnet [aut], Vincent Segura [aut], Bjarni J. Vilhjalmsson [aut], Clement Mabire [aut], Timothee Flutre [aut] |
| Maintainer: | Clement Mabire <clement.mabire at inra.fr> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Materials: | NEWS |
| In views: | Agriculture |
| CRAN checks: | mlmm.gwas results |
| Reference manual: | mlmm.gwas.pdf |
| Vignettes: |
GWAS pipeline manual |
| Package source: | mlmm.gwas_1.0.6.tar.gz |
| Windows binaries: | r-devel: mlmm.gwas_1.0.6.zip, r-release: mlmm.gwas_1.0.6.zip, r-oldrel: mlmm.gwas_1.0.6.zip |
| macOS binaries: | r-release (arm64): mlmm.gwas_1.0.6.tgz, r-oldrel (arm64): mlmm.gwas_1.0.6.tgz, r-release (x86_64): mlmm.gwas_1.0.6.tgz, r-oldrel (x86_64): mlmm.gwas_1.0.6.tgz |
| Old sources: | mlmm.gwas archive |
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