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mixIndependR 1.0.0 -2021.03.16

• updated “AlleleShare” and it is not compatible with odd sample size.
• update the version number and maintainer’s email address.

mixIndependR 0.4.4 -2021.01.07

• add citation information and publication link

mixIndependR 0.4.3 -2020.11.29

• Fix the bugs about exports of functions “read_vcf_gt” and “splitGenotype”.
• Update the NAMESPACE file to including the missing functions.

mixIndependR 0.4.2 -2020.11.26

Bug Fix

• Fix the bugs about dependency and support in “Description”.
• Optimize the size of plots in vignettes.

mixIndependR 0.4.1 -2020.11.24

Bug Fix

• Fix the bug in “GenotypeFreq” when expect = FALSE # Update Vignettes
• Attach dataset “mixexample” and update the example.

mixIndependR 0.4.0 -2020.11.24

Function Optimizing

• Optimize most functions and replace loops with parallel calculation. # New Functions
• Add function “read_vcf_gt” and “splitGenotype”, and make data importing compatible with excel, csv and vcf format for genotype.
• Remove the function “HWE.Fisher” for the moment # Vignette
• Update for the new version.

mixIndependR 0.3.0 -2020.10.05

New Functions

• add two functions “mixIndependK” and “mixIndependX”
• remove the function “Prop_Pvalue” # Vignette
• Vignettes are built

mixIndependR 0.2.3 -2020.09.24

Optimization

• optimize the function “Prop_Pvalue” by adding a logical variable “print”.

mixIndependR 0.2.2 -2020.09.20

Optimization

• simplify function “counta”

mixIndependR 0.2.1 -2020.03.11

Fix Bugs

• Fix the error that “AlleleShare_Table” cannot deal with samples with odd sample size when “replicate=F” # Add New Function
• Add a function named as “Prop_Pvalue” which can generate a bundle of p-values for one sample # Update Description Files
• The Edition

mixIndependR 0.2.0 -2020.02.01

Fix bugs

• Fix format conflict in “AlleleShare_Table”

• Solve “NA” problem in “Dis_SimuChisq” # Update Description Files

• Add “References” to “DistAlleleShare”, “ExpProAlleleShare”, “GenotypeFreq”, “HWE_Fisher”, and “RxpHetero”

• Correct “Usage” to include more information of input.

• Add “examples” to all R functions. # New .R files

• “RxpHetero” to calculate average heterozygosity of observed or under Hardy-Weinberg Equilibrium

• “FreqAlleleShare” to build observed distribution for No. of shared alleles

• “FreqHetero” build observed distribution for No. of heterozygous loci

• “RealProAlleleShare” to calculate real density of shared alleles on each loci.

• “ComposPare_K” to generate a dataframe including observed and expected data of No. of heterozygous loci for easily plotting.

• “ComposPare_X” to generate a dataframe including observed and expected data of No. of sharing alleles for easily plotting. # Update Old .R files

• Add column names to “AlleleShare_Table”

• Added a NEWS.md file to track changes to the package.

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They may not be fully stable and should be used with caution. We make no claims about them.
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