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Wrapper for 'Minimap2'. 'Minimap2' is a very valuable long read aligner for the Pacbio and Oxford Nanopore Technologies sequencing platforms. 'minimapR' is an R wrapper for 'minimap2' which was developed by Heng Li <me@liheng.org>. *SPECIAL NOTES 1. Examples can only be run from 'GitHub' installation. 2. 'conda' or 'mamba' must be used to install 'minimapR' on your system. Li, Heng (2018) <doi:10.1093/bioinformatics/bty191> "Minimap2: pairwise alignment for nucleotide sequences".
Version: | 0.0.1.1 |
Depends: | R (≥ 4.4.0), Rsamtools, pafr |
Suggests: | knitr, rmarkdown |
Published: | 2025-03-30 |
DOI: | 10.32614/CRAN.package.minimapR |
Author: | Jake Reed |
Maintainer: | Jake Reed <hreed.ga at gmail.com> |
License: | MIT + file LICENSE |
URL: | https://github.com/jake-bioinfo/minimapR |
NeedsCompilation: | no |
Materials: | README |
CRAN checks: | minimapR results |
Reference manual: | minimapR.pdf |
Vignettes: |
Using minimapR (source, R code) |
Package source: | minimapR_0.0.1.1.tar.gz |
Windows binaries: | r-devel: minimapR_0.0.1.1.zip, r-release: minimapR_0.0.1.1.zip, r-oldrel: not available |
macOS binaries: | r-devel (arm64): minimapR_0.0.1.1.tgz, r-release (arm64): minimapR_0.0.1.1.tgz, r-oldrel (arm64): not available, r-devel (x86_64): minimapR_0.0.1.1.tgz, r-release (x86_64): minimapR_0.0.1.1.tgz, r-oldrel (x86_64): not available |
Old sources: | minimapR archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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