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minimapR: Wrapper for 'minimap2'

Wrapper for 'Minimap2'. 'Minimap2' is a very valuable long read aligner for the Pacbio and Oxford Nanopore Technologies sequencing platforms. 'minimapR' is an R wrapper for 'minimap2' which was developed by Heng Li <me@liheng.org>. *SPECIAL NOTES 1. Examples can only be run from 'GitHub' installation. 2. 'conda' or 'mamba' must be used to install 'minimapR' on your system. Li, Heng (2018) <doi:10.1093/bioinformatics/bty191> "Minimap2: pairwise alignment for nucleotide sequences".

Version: 0.0.1.1
Depends: R (≥ 4.4.0), Rsamtools, pafr
Suggests: knitr, rmarkdown
Published: 2025-03-30
DOI: 10.32614/CRAN.package.minimapR
Author: Jake Reed ORCID iD [aut, cre], Pradyun Pulipaka [ctb]
Maintainer: Jake Reed <hreed.ga at gmail.com>
License: MIT + file LICENSE
URL: https://github.com/jake-bioinfo/minimapR
NeedsCompilation: no
Materials: README
CRAN checks: minimapR results

Documentation:

Reference manual: minimapR.pdf
Vignettes: Using minimapR (source, R code)

Downloads:

Package source: minimapR_0.0.1.1.tar.gz
Windows binaries: r-devel: minimapR_0.0.1.1.zip, r-release: minimapR_0.0.1.1.zip, r-oldrel: not available
macOS binaries: r-devel (arm64): minimapR_0.0.1.1.tgz, r-release (arm64): minimapR_0.0.1.1.tgz, r-oldrel (arm64): not available, r-devel (x86_64): minimapR_0.0.1.1.tgz, r-release (x86_64): minimapR_0.0.1.1.tgz, r-oldrel (x86_64): not available
Old sources: minimapR archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=minimapR to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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