The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.

microbiomeMQC: Calculate 4 Key Reporting Measures

Perform calculations for the WHO International Reference Reagents for the microbiome. Using strain, species or genera abundance tables generated through analysis of 16S ribosomal RNA sequencing or shotgun sequencing which included a reference reagent. This package will calculate measures of sensitivity, False positive relative abundance, diversity, and similarity based on mean average abundances with respect to the reference reagent.

Version: 1.0.2
Depends: R (≥ 3.5.0)
Imports: readxl, vegan
Suggests: testthat, knitr, rmarkdown
Published: 2024-09-16
DOI: 10.32614/CRAN.package.microbiomeMQC
Author: Jacob Dehinsilu ORCID iD [aut, cre], Ravneet Bhuller [aut]
Maintainer: Jacob Dehinsilu <jacobdehinsilu at outlook.com>
License: GPL-3
NeedsCompilation: no
CRAN checks: microbiomeMQC results

Documentation:

Reference manual: microbiomeMQC.pdf
Vignettes: Using microbiomeMQC (source, R code)

Downloads:

Package source: microbiomeMQC_1.0.2.tar.gz
Windows binaries: r-devel: microbiomeMQC_1.0.2.zip, r-release: microbiomeMQC_1.0.2.zip, r-oldrel: microbiomeMQC_1.0.2.zip
macOS binaries: r-release (arm64): microbiomeMQC_1.0.2.tgz, r-oldrel (arm64): microbiomeMQC_1.0.2.tgz, r-release (x86_64): microbiomeMQC_1.0.2.tgz, r-oldrel (x86_64): microbiomeMQC_1.0.2.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=microbiomeMQC to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.