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microPop: Process-Based Modelling of Microbial Populations

Modelling interacting microbial populations - example applications include human gut microbiota, rumen microbiota and phytoplankton. Solves a system of ordinary differential equations to simulate microbial growth and resource uptake over time. This version contains network visualisation functions.

Version: 1.6
Depends: deSolve, visNetwork
Imports: testthat, methods
Suggests: rmarkdown, R.rsp, knitr, webshot
Published: 2022-02-03
DOI: 10.32614/CRAN.package.microPop
Author: Helen Kettle [aut, cre]
Maintainer: Helen Kettle <Helen.Kettle at bioss.ac.uk>
License: GPL-3 | file LICENSE
URL: https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.12873
NeedsCompilation: no
CRAN checks: microPop results

Documentation:

Reference manual: microPop.pdf
Vignettes: microPop Tutorial
Networks

Downloads:

Package source: microPop_1.6.tar.gz
Windows binaries: r-devel: microPop_1.6.zip, r-release: microPop_1.6.zip, r-oldrel: microPop_1.6.zip
macOS binaries: r-release (arm64): microPop_1.6.tgz, r-oldrel (arm64): microPop_1.6.tgz, r-release (x86_64): microPop_1.6.tgz, r-oldrel (x86_64): microPop_1.6.tgz
Old sources: microPop archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=microPop to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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