metan: Multi Environment Trials Analysis
Performs stability analysis of multi-environment trial data
using parametric and non-parametric methods. Parametric methods
includes Additive Main Effects and Multiplicative Interaction (AMMI)
analysis by Gauch (2013) <doi:10.2135/cropsci2013.04.0241>, Ecovalence
by Wricke (1965), Genotype plus Genotype-Environment (GGE) biplot
analysis by Yan & Kang (2003) <doi:10.1201/9781420040371>, geometric
adaptability index by Mohammadi & Amri (2008)
<doi:10.1007/s10681-007-9600-6>, joint regression analysis by Eberhart
& Russel (1966) <doi:10.2135/cropsci1966.0011183X000600010011x>,
genotypic confidence index by Annicchiarico (1992), Murakami & Cruz's
(2004) method, power law residuals (POLAR) statistics by Doring et al.
(2015) <doi:10.1016/j.fcr.2015.08.005>, scale-adjusted coefficient of
variation by Doring & Reckling (2018) <doi:10.1016/j.eja.2018.06.007>,
stability variance by Shukla (1972) <doi:10.1038/hdy.1972.87>,
weighted average of absolute scores by Olivoto et al. (2019a)
<doi:10.2134/agronj2019.03.0220>, and multi-trait stability index by
Olivoto et al. (2019b) <doi:10.2134/agronj2019.03.0221>.
Non-parametric methods includes superiority index by Lin & Binns
(1988) <doi:10.4141/cjps88-018>, nonparametric measures of phenotypic
stability by Huehn (1990)
<https://link.springer.com/article/10.1007/BF00024241>, TOP third
statistic by Fox et al. (1990) <doi:10.1007/BF00040364>. Functions for
computing biometrical analysis such as path analysis, canonical
correlation, partial correlation, clustering analysis, and tools for
inspecting, manipulating, summarizing and plotting typical
multi-environment trial data are also provided.
| Version: |
1.18.0 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
dplyr (≥ 1.0.0), GGally, ggforce, ggplot2 (≥ 3.3.0), ggrepel, lme4, lmerTest, magrittr, mathjaxr, methods, patchwork, purrr, rlang (≥ 0.4.11), tibble, tidyr, tidyselect (≥ 1.0.0) |
| Suggests: |
DT, knitr, rmarkdown, roxygen2, rstudioapi |
| Published: |
2023-03-05 |
| Author: |
Tiago Olivoto 
[aut, cre, cph] |
| Maintainer: |
Tiago Olivoto <tiagoolivoto at gmail.com> |
| BugReports: |
https://github.com/TiagoOlivoto/metan/issues |
| License: |
GPL-3 |
| URL: |
https://github.com/TiagoOlivoto/metan |
| NeedsCompilation: |
no |
| Language: |
en-US |
| Citation: |
metan citation info |
| Materials: |
NEWS |
| In views: |
Agriculture |
| CRAN checks: |
metan results |
Documentation:
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