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Using non-parametric tests, naive associations between omics features and metadata in cross-sectional data-sets are detected. In a second step, confounding effects between metadata associated to the same omics feature are detected and labeled using nested post-hoc model comparison tests, as first described in Forslund, Chakaroun, Zimmermann-Kogadeeva, et al. (2021) <doi:10.1038/s41586-021-04177-9>. The generated output can be graphically summarized using the built-in plotting function.
Version: | 1.0.2 |
Depends: | R (≥ 3.5.0), detectseparation |
Imports: | lmtest, foreach, parallel, doParallel, stats, futile.logger, lme4, ggplot2, reshape2, methods, rlang |
Suggests: | pander, knitr, gridExtra, kableExtra |
Published: | 2024-06-25 |
DOI: | 10.32614/CRAN.package.metadeconfoundR |
Author: | Till Birkner |
Maintainer: | Till Birkner <metadeconf at till-birkner.de> |
BugReports: | https://github.com/TillBirkner/metadeconfoundR/issues |
License: | GPL-2 |
URL: | https://github.com/TillBirkner/metadeconfoundR |
NeedsCompilation: | no |
Materials: | README NEWS |
CRAN checks: | metadeconfoundR results |
Reference manual: | metadeconfoundR.pdf |
Vignettes: |
Introduction to metadeconfoundR |
Package source: | metadeconfoundR_1.0.2.tar.gz |
Windows binaries: | r-devel: metadeconfoundR_1.0.2.zip, r-release: metadeconfoundR_1.0.2.zip, r-oldrel: metadeconfoundR_1.0.2.zip |
macOS binaries: | r-release (arm64): metadeconfoundR_1.0.2.tgz, r-oldrel (arm64): metadeconfoundR_1.0.2.tgz, r-release (x86_64): metadeconfoundR_1.0.2.tgz, r-oldrel (x86_64): metadeconfoundR_1.0.2.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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