metaGE: Meta-Analysis for Detecting Genotype x Environment Associations

Meta-analysis of genome-wide association studies for studying Genotype x Environment interactions. The 4 main functions of the package metaGE.collect(), metaGE.cor(), metaGE.fit() and metaGE.test() correspond to 4 steps to perform the meta-analysis: Collecting the results of genome-wide association studies data from different files; Inferring the inter-environment correlation matrix; Performing global test procedure for quantitative trait loci detection (using a Fixed or Random effect model); Performing tests of contrast or meta-regression using an environmental co-factor. (De Walsche, A., et al. (2023) <doi:10.1101/2023.03.01.530237>).

Version:	1.0.3
Depends:	R (≥ 3.0.2)
Imports:	corrplot, data.table, dplyr, emdbook, future, ggplot2, ggrepel, gplots, graphics, grDevices, ks, purrr, qqman, Rfast, stats, stringr, tibble, tidyr, utils, viridis
Suggests:	DT, knitr, rmarkdown, tidyverse
Published:	2023-09-28
Author:	Annaïg De Walsche [aut, cre], Tristan Mary-Huard [aut]
Maintainer:	Annaïg De Walsche <annaig.de-walsche at inrae.fr>
License:	GPL-3
NeedsCompilation:	no
In views:	MetaAnalysis
CRAN checks:	metaGE results

Documentation:

Reference manual:	metaGE.pdf
Vignettes:	metaGE-vignette

Downloads:

Package source:	metaGE_1.0.3.tar.gz
Windows binaries:	r-devel: metaGE_1.0.3.zip, r-release: metaGE_1.0.3.zip, r-oldrel: metaGE_1.0.3.zip
macOS binaries:	r-release (arm64): metaGE_1.0.3.tgz, r-oldrel (arm64): metaGE_1.0.3.tgz, r-release (x86_64): metaGE_1.0.3.tgz, r-oldrel (x86_64): metaGE_1.0.3.tgz
Old sources:	metaGE archive

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