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Two pipelines are provided to study microbial turnover along a gradient, including the beta diversity and microbial abundance change. The 'betaturn' class consists of the steps of community dissimilarity matrix generation, matrix conversion, differential test and visualization. The workflow of 'taxaturn' class includes the taxonomic abundance calculation, abundance transformation, abundance change summary, statistical analysis and visualization. Multiple statistical approaches can contribute to the analysis of microbial turnover.
| Version: | 0.3.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | R6, ggplot2 (≥ 3.4.0), microeco (≥ 0.20.0), GUniFrac, magrittr, ggpubr, lmerTest, betareg, glmmTMB |
| Suggests: | ape, agricolae |
| Published: | 2023-09-10 |
| DOI: | 10.32614/CRAN.package.mecoturn |
| Author: | Chi Liu [aut, cre], Xiangzhen Li [ctb], Minjie Yao [ctb] |
| Maintainer: | Chi Liu <liuchi0426 at 126.com> |
| License: | GPL-3 |
| URL: | https://github.com/ChiLiubio/mecoturn |
| NeedsCompilation: | no |
| Citation: | mecoturn citation info |
| CRAN checks: | mecoturn results |
| Reference manual: | mecoturn.pdf |
| Package source: | mecoturn_0.3.0.tar.gz |
| Windows binaries: | r-devel: mecoturn_0.3.0.zip, r-release: mecoturn_0.3.0.zip, r-oldrel: mecoturn_0.3.0.zip |
| macOS binaries: | r-release (arm64): mecoturn_0.3.0.tgz, r-oldrel (arm64): mecoturn_0.3.0.tgz, r-release (x86_64): mecoturn_0.3.0.tgz, r-oldrel (x86_64): mecoturn_0.3.0.tgz |
| Old sources: | mecoturn archive |
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