The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.

mcmcr 0.7.0

New features

• coef() methods and tidy.mcmcr() gain a directional_information argument. When TRUE the svalue column reports extras::directional_information() in place of extras::svalue() (#71, #84). The default is currently FALSE and will change to TRUE in a future release; calling either function without setting directional_information now signals a deprecation warning so the change can be made explicit.

Breaking changes

• tidy.mcmcr() now defaults to simplify = TRUE, matching the nlist tidy() methods.
• coef(simplify = FALSE), deprecated in 0.4.1, is now defunct (#74).
• The re-exports of term’s parameters() and parameters<-(), which are defunct in term, have been removed (#85).
• rhat.mcmcrs(bound = TRUE) now returns a named list of scalars rather than a single scalar; use rhat(x, bound = TRUE)$bound for the previous behavior. The change is signaled with a warning (#74).

Deprecations

The following, soft-deprecated in 0.2.1, now warn on every use (#72):

• terms(); use as_term() instead.
• zero(); use fill_all() instead.
• check_mcmcarray() and check_mcmcr(); use chk_mcmcarray() and chk_mcmcr() instead.
• subset(iterations = ) and subset(parameters = ); use subset(iters = ) and subset(pars = ) instead.
• pars(terms = ); use term::pars_terms(as_term(x)) for terms = TRUE, and pars(x) for terms = FALSE.

Minor improvements and fixes

• extras is now required at version 0.10.0 or later, and nlist at version 0.5.0 or later.

mcmcr 0.6.2

• Depends on R >= 4.0.
• When bound = TRUE rhat() now also returns rhat values for separate analyses.
• When bound = TRUE and as_df = TRUE rhat() now returns a data.frame with the rhat values for the separate and combined analyses.

mcmcr 0.6.1

• Update testing to testthat 3.

mcmcr 0.6.0

• Added fill_na() for mcarray, mcmcarray and mcmcr.
• Fixed as.mcmcarray.mcmc() (and as.mcmcr.mcmc()) so now returns an mcmcarray (and mcmcr) object with no terms.

mcmcr 0.5.0

• Added
  • tidy.mcmcr().
  • simplify = FALSE argument to coef() and tidy() and soft-deprecated if not TRUE.
  • ... optional arguments for fun = median argument to estimates().
• Moved as_nlists.mcmc.list() to nlist package.

mcmcr 0.4.0

• Added as_mcmc_list.mcmr().
• Moved the following to nlist
  • as_nlist.mcmc() and as_nlist.mcmc.list()
  • as_nlists.mcmc()
  • as.term.mcmc() and as.term.mcmc.list()
  • bind_iterations.mcmc() and bind_iterations.mcmc.list()
  • collapse_chains.default() and collapse_chains.mcmc.list()

mcmcr 0.3.0

• Changed
  • npdims.mcmc.list() to return character vector (as opposed to list)
  • collapse_chains.mcmc.list() to return an mcmc.list object with one chain (as opposed to an mcmc object)
  • first argument of estimates() from object to x.
  • scalar_only = FALSE argument of pars() to scalar = NA.
  • estimates() so now checks fun returns scalar numeric.
• Soft-deprecated
  • pvalue() for extras::pvalue().
  • zero() for fill_all().
  • check_mcmcarray() and check_mcmcr() for chk_mcmcarray() and chk_mcmcr().
  • iterations argument with iters in subset().
  • parameters argument with pars in subset().
• Added
  • vld_() and chk_() functions for mcmcarray and mcmcr objects.
  • scalar = NULL argument to pars() and npars().
  • na_rm = NA argument to esr() and rhat().
  • missing as_df = FALSE arg to esr() for mcarray, mcmc and mcmc.list.
  • coercion to and from nlists objects for mcmcr, mcmc.list and mcmc objects.
• Moved
  • handling of terms to term package.
  • generic definitions of nchains(), niters(), collapse_chains() and split_chains() etc to universals package.

mcmcr 0.2.0

• Added check_mcmcr() and check_mcmcarray().
• Fixed by and as_df arguments in converged().
• Added more tests.
• Removed as.mcmc.mcmc.list(), thin.mcmc() and thin.mcmc.list() as now defined by coda.
• No longer export as.mcmc.list.mcarray() as clashes with rjags version.

mcmcr 0.1.0

• Added mcmc_aperm() function to transpose parameter dimensions.
• Added npdims() function to get number of parameter dimensions.
• Added by = TRUE argument to mcmc_map() function.
• Removed tibble package from suggests.
• rhat() now returns minimum of 1.
• Defined subset() and parameters() for mcmcrs object.
• Added bound = FALSE argument to rhat.mcmcrs() and converged.mcmcrs() functions.

mcmcr 0.0.3

• Moved graphics, coef, tibble packages from imports to suggests.
• Replaced internal error() with err::err().

mcmcr 0.0.2

• Allowed NAs in values to calculate pvalues.
• Updated to not use length argument in checkr as deprecated.

mcmcr 0.0.1

• Released to CRAN.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.