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Evaluate whether a microbiome sample is a mixture of two samples, by fitting a model for the number of read counts as a function of single nucleotide polymorphism (SNP) allele and the genotypes of two potential source samples. Lobo et al. (2021) <doi:10.1093/g3journal/jkab308>.
Version: | 0.4 |
Depends: | R (≥ 3.1.0) |
Imports: | stats, parallel, numDeriv |
Suggests: | knitr, rmarkdown, testthat, devtools, roxygen2 |
Published: | 2023-04-27 |
DOI: | 10.32614/CRAN.package.mbmixture |
Author: | Karl W Broman |
Maintainer: | Karl W Broman <broman at wisc.edu> |
BugReports: | https://github.com/kbroman/mbmixture/issues |
License: | MIT + file LICENSE |
URL: | https://github.com/kbroman/mbmixture |
NeedsCompilation: | no |
Citation: | mbmixture citation info |
Materials: | README NEWS |
CRAN checks: | mbmixture results |
Reference manual: | mbmixture.pdf |
Vignettes: |
R/mbmixture User Guide |
Package source: | mbmixture_0.4.tar.gz |
Windows binaries: | r-devel: mbmixture_0.4.zip, r-release: mbmixture_0.4.zip, r-oldrel: mbmixture_0.4.zip |
macOS binaries: | r-release (arm64): mbmixture_0.4.tgz, r-oldrel (arm64): mbmixture_0.4.tgz, r-release (x86_64): mbmixture_0.4.tgz, r-oldrel (x86_64): mbmixture_0.4.tgz |
Old sources: | mbmixture archive |
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