The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
Takes a .state file generated by IQ-TREE as an input and, for each ancestral node present in the file, generates a FASTA-formatted maximum likelihood (ML) sequence as well as an ‘AltAll’ sequence in which uncertain sites, determined by the two parameters thres_1 and thres_2, have the maximum likelihood state swapped with the next most likely state as described in Geeta N. Eick, Jamie T. Bridgham, Douglas P. Anderson, Michael J. Harms, and Joseph W. Thornton (2017), "Robustness of Reconstructed Ancestral Protein Functions to Statistical Uncertainty" <doi:10.1093/molbev/msw223>.
| Version: | 0.1.0 |
| Imports: | data.table, dplyr, magrittr, tidyr |
| Published: | 2024-09-25 |
| DOI: | 10.32614/CRAN.package.maxaltall |
| Author: | Alec S. Chu [aut], Philip D. Kiser [aut, cre] |
| Maintainer: | Philip D. Kiser <pkiser at uci.edu> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | no |
| CRAN checks: | maxaltall results |
| Reference manual: | maxaltall.pdf |
| Package source: | maxaltall_0.1.0.tar.gz |
| Windows binaries: | r-devel: maxaltall_0.1.0.zip, r-release: maxaltall_0.1.0.zip, r-oldrel: maxaltall_0.1.0.zip |
| macOS binaries: | r-release (arm64): maxaltall_0.1.0.tgz, r-oldrel (arm64): maxaltall_0.1.0.tgz, r-release (x86_64): maxaltall_0.1.0.tgz, r-oldrel (x86_64): maxaltall_0.1.0.tgz |
Please use the canonical form https://CRAN.R-project.org/package=maxaltall to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.