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marked: Mark-Recapture Analysis for Survival and Abundance Estimation

Functions for fitting various models to capture-recapture data including mixed-effects Cormack-Jolly-Seber(CJS) and multistate models and the multi-variate state model structure for survival estimation and POPAN structured Jolly-Seber models for abundance estimation. There are also Hidden Markov model (HMM) implementations of CJS and multistate models with and without state uncertainty and a simulation capability for HMM models.

Version: 1.2.8
Depends: R (≥ 3.5.0), lme4, methods, parallel
Imports: graphics, stats, utils, R2admb, truncnorm, coda, Matrix, numDeriv, expm, Rcpp (≥ 0.9.13), TMB, optimx (≥ 2013.8.6), data.table, knitr, kableExtra, bookdown
LinkingTo: Rcpp
Suggests: ggplot2
Published: 2023-10-19
DOI: 10.32614/CRAN.package.marked
Author: Jeff Laake, Devin Johnson, Paul Conn, example for simHMM from Jay Rotella
Maintainer: Jeff Laake <jefflaake at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
SystemRequirements: ADMB version 11 <http://admb-project.org/> for use.admb=TRUE; see readme.txt
Citation: marked citation info
Materials: NEWS
In views: Environmetrics
CRAN checks: marked results

Documentation:

Reference manual: marked.pdf
Vignettes: "marked Package Vignette"

Downloads:

Package source: marked_1.2.8.tar.gz
Windows binaries: r-devel: marked_1.2.8.zip, r-release: marked_1.2.8.zip, r-oldrel: marked_1.2.8.zip
macOS binaries: r-release (arm64): marked_1.2.8.tgz, r-oldrel (arm64): marked_1.2.8.tgz, r-release (x86_64): marked_1.2.8.tgz, r-oldrel (x86_64): marked_1.2.8.tgz
Old sources: marked archive

Reverse dependencies:

Reverse imports: RWildbook
Reverse suggests: FSA

Linking:

Please use the canonical form https://CRAN.R-project.org/package=marked to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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