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Utility functions for mutational signature analysis as described in Alexandrov, L. B. (2020) <doi:10.1038/s41586-020-1943-3>. This package provides two groups of functions. One is for dealing with mutational signature "exposures" (i.e. the counts of mutations in a sample that are due to each mutational signature). The other group of functions is for matching or comparing sets of mutational signatures. 'mSigTools' stands for mutational Signature analysis Tools.
Version: | 1.0.7 |
Imports: | clue, philentropy, quadprog, sets |
Suggests: | cosmicsig, ICAMS, spelling, testthat (≥ 3.0.0) |
Published: | 2023-01-13 |
DOI: | 10.32614/CRAN.package.mSigTools |
Author: | Steven Rozen |
Maintainer: | Steven Rozen <steverozen at pm.me> |
BugReports: | https://github.com/Rozen-Lab/mSigTools/issues |
License: | GPL-3 |
URL: | https://github.com/Rozen-Lab/mSigTools |
NeedsCompilation: | no |
Language: | en-US |
Citation: | mSigTools citation info |
Materials: | README NEWS |
CRAN checks: | mSigTools results |
Reference manual: | mSigTools.pdf |
Package source: | mSigTools_1.0.7.tar.gz |
Windows binaries: | r-devel: mSigTools_1.0.7.zip, r-release: mSigTools_1.0.7.zip, r-oldrel: mSigTools_1.0.7.zip |
macOS binaries: | r-release (arm64): mSigTools_1.0.7.tgz, r-oldrel (arm64): mSigTools_1.0.7.tgz, r-release (x86_64): mSigTools_1.0.7.tgz, r-oldrel (x86_64): mSigTools_1.0.7.tgz |
Old sources: | mSigTools archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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