The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
An R to C/C++ interface that runs the Leiden community detection algorithm to find a basic partition (). It runs the equivalent of the 'leidenalg' find_partition() function, which is given in the 'leidenalg' distribution file 'leiden/src/functions.py'. This package includes the required source code files from the official 'leidenalg' distribution and functions from the R 'igraph' package. The 'leidenalg' distribution is available from <https://github.com/vtraag/leidenalg/> and the R 'igraph' package is available from <https://igraph.org/r/>. The Leiden algorithm is described in the article by Traag et al. (2019) <doi:10.1038/s41598-019-41695-z>. Leidenbase includes code from the packages: igraph version 0.9.8 with license GPL (>= 2), leidenalg version 0.8.10 with license GPL 3.
Version: | 0.1.30 |
Depends: | R (≥ 3.5.0) |
Imports: | igraph (≥ 0.9.0) |
Suggests: | rmarkdown, knitr, testthat (≥ 3.1.0), pandoc |
Published: | 2024-07-10 |
DOI: | 10.32614/CRAN.package.leidenbase |
Author: | Brent Ewing [aut, cre], Vincent Traag [ctb], Gábor Csárdi [ctb], Tamás Nepusz [ctb], Szabolcs Horvat [ctb], Fabio Zanini [ctb] |
Maintainer: | Brent Ewing <bge at uw.edu> |
BugReports: | https://github.com/cole-trapnell-lab/leidenbase/issues |
License: | GPL-3 |
URL: | https://github.com/cole-trapnell-lab/leidenbase |
NeedsCompilation: | yes |
Materials: | NEWS |
CRAN checks: | leidenbase results |
Reference manual: | leidenbase.pdf |
Vignettes: |
leidenbase |
Package source: | leidenbase_0.1.30.tar.gz |
Windows binaries: | r-devel: leidenbase_0.1.30.zip, r-release: leidenbase_0.1.30.zip, r-oldrel: leidenbase_0.1.30.zip |
macOS binaries: | r-release (arm64): leidenbase_0.1.30.tgz, r-oldrel (arm64): leidenbase_0.1.30.tgz, r-release (x86_64): leidenbase_0.1.30.tgz, r-oldrel (x86_64): leidenbase_0.1.30.tgz |
Old sources: | leidenbase archive |
Reverse imports: | monocle |
Please use the canonical form https://CRAN.R-project.org/package=leidenbase to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.