kmeRs: K-Mers Similarity Score Matrix and HeatMap

Similarity Score Matrix and HeatMap for nucleic and amino acid k-mers. Similarity score is evaluated by Point Accepted Mutation (PAM) and BLOcks SUbstitution Matrix (BLOSUM). The 30, 40, 70, 120, 250 and 62, 45, 50, 62, 80, 100 matrix versions are available for PAM and BLOSUM, respectively. Alignment is evaluated by local and global alignment.

Version:	2.1.0
Depends:	R (≥ 3.4.0)
Imports:	utils, stats, Biostrings, BiocGenerics, pwalign
Suggests:	RColorBrewer, knitr, rmarkdown, unittest, testthat (≥ 3.0.0)
Published:	2024-07-17
DOI:	10.32614/CRAN.package.kmeRs
Author:	Rafal Urniaz [aut, cre], Jason Lin [ctb]
Maintainer:	Rafal Urniaz <rafal.urniaz at cantab.net>
BugReports:	https://github.com/urniaz/kmeRs/issues
License:	GPL-3
URL:	https://github.com/urniaz/kmeRs
NeedsCompilation:	no
Citation:	kmeRs citation info
Materials:	NEWS
CRAN checks:	kmeRs results

Documentation:

Reference manual:	kmeRs.pdf
Vignettes:	Introduction to the kmeRs R package

Downloads:

Package source:	kmeRs_2.1.0.tar.gz
Windows binaries:	r-devel: kmeRs_2.1.0.zip, r-release: kmeRs_2.1.0.zip, r-oldrel: not available
macOS binaries:	r-release (arm64): kmeRs_2.1.0.tgz, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available
Old sources:	kmeRs archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=kmeRs to link to this page.