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jetset: One-to-One Gene-Probeset Mapping for Affymetrix Human Microarrays

On Affymetrix gene expression microarrays, a single gene may be measured by multiple probe sets. This can present a mild conundrum when attempting to evaluate a gene "signature" that is defined by gene names rather than by specific probe sets. This package provides a one-to-one mapping from gene to "best" probe set for four Affymetrix human gene expression microarrays: hgu95av2, hgu133a, hgu133plus2, and u133x3p. This package also includes the pre-calculated probe set quality scores that were used to define the mapping.

Version: 3.4.0
Depends: R (≥ 2.10)
Imports: org.Hs.eg.db, AnnotationDbi
Published: 2017-04-05
DOI: 10.32614/CRAN.package.jetset
Author: Qiyuan Li, Aron Eklund
Maintainer: Aron Eklund <eklund at cbs.dtu.dk>
License: Artistic-2.0
URL: http://www.cbs.dtu.dk/biotools/jetset/
NeedsCompilation: no
Citation: jetset citation info
Materials: README NEWS
CRAN checks: jetset results

Documentation:

Reference manual: jetset.pdf
Vignettes: Using jetset

Downloads:

Package source: jetset_3.4.0.tar.gz
Windows binaries: r-devel: jetset_3.4.0.zip, r-release: jetset_3.4.0.zip, r-oldrel: jetset_3.4.0.zip
macOS binaries: r-release (arm64): jetset_3.4.0.tgz, r-oldrel (arm64): jetset_3.4.0.tgz, r-release (x86_64): jetset_3.4.0.tgz, r-oldrel (x86_64): jetset_3.4.0.tgz
Old sources: jetset archive

Reverse dependencies:

Reverse imports: easyDifferentialGeneCoexpression, Patterns

Linking:

Please use the canonical form https://CRAN.R-project.org/package=jetset to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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