Big IPUMS Data

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Big IPUMS Data

Browsing for IPUMS data can be a little like grocery shopping when you’re hungry—you show up to grab a couple things, but everything looks so good that you end up with an overflowing cart.¹ Unfortunately, this can lead to extracts so large that they don’t fit in your computer’s memory.

If you’ve got an extract that’s too big, both the IPUMS website and the ipumsr package have tools to help. There are four basic strategies:

ipumsr can’t do much for you when it comes to option 1, but it can help facilitate some of the other options.

Setup

The examples in this vignette will rely on a few helpful packages. If you haven’t already installed them, you can do so with:

# To run the full vignette, you'll also need the following packages. If they
# aren't installed already, do so with:
install.packages("biglm")
install.packages("DBI")
install.packages("RSQLite")
install.packages("dbplyr")

library(ipumsr)
library(dplyr)

Option 1: Trade money for convenience

If you need to work with a dataset that’s too big for your RAM, the simplest option is to get more space. If upgrading your hardware isn’t an option, paying for a cloud service like Amazon or Microsoft Azure may be worth considering. Here are guides for using R on Amazon and Microsoft Azure.

Of course, this option isn’t feasible for most users—in this case, updates to the data being used in the analysis or the processing pipeline may be required.

Option 2: Reduce extract size

Remove unused data

The easiest way to reduce the size of your extract is to drop unused samples and variables. This can be done through the extract interface for the specific IPUMS project you’re using or within R using the IPUMS API (for projects that are supported).

If using the API, simply updated your extract definition code to exclude the specifications that you no longer need. Then, resubmit the extract request and download the new files.

See the introduction to the IPUMS API for more information about making extract requests from ipumsr.

Select cases

For microdata projects, another good option for reducing extract size is to select only those cases that are relevant to your research question, producing an extract containing only data for a particular subset of values for a given variable.

If you’re using the IPUMS API, you can use var_spec() to specify case selections for a variable in an extract definition. For instance, the following would produce an extract only including records for married women:

define_extract_micro(
  "usa",
  description = "2013 ACS Data for Married Women",
  samples = "us2013a",
  variables = list(
    var_spec("MARST", case_selections = "1"),
    var_spec("SEX", case_selections = "2")
  )
)
#> Unsubmitted IPUMS USA extract 
#> Description: 2013 ACS Data for Married Women
#> 
#> Samples: (1 total) us2013a
#> Variables: (2 total) MARST, SEX

If you’re using the online interface, the Select Cases option will be available on the last page before submitting an extract request.

Use a sampled subset of the data

Yet another option (also only for microdata projects) is to take a random subsample of the data before producing your extract.

Sampled data is not available via the IPUMS API, but you can use the Customize Sample Size option in the online interface to do so. This also appears on the final page before submitting an extract request.

If you’ve already submitted the extract, you can click the REVISE link on the Download or Revise Extracts page to access these features and produce a new data extract.

Option 3: Process the data in pieces

ipumsr provides two related options for reading data sources in increments:

Chunked functions allow you to specify a function that will be called on each chunk of data as it is read in as well as how you would like the chunks to be combined at the end. These functions use the readr framework for reading chunked data.
Yielded functions allow more flexibility by returning control to the user between the loading of each piece of data. These functions are unique to ipumsr and fixed-width data.

Reading chunked data

Use read_ipums_micro_chunked() and read_ipums_micro_list_chunked() to read data in chunks. These are analogous to the standard read_ipums_micro() and read_ipums_micro_list() functions, but allow you to specify a function that will be applied to each data chunk and control how the results from these chunks are combined.

Below, we’ll use chunking to outline solutions to three common use-cases for IPUMS data: tabulation, regression and case selection.

First, we’ll load our example data. Note that we have down-sampled the data in this example for storage reasons; none of the output “results” reflected in this vignette should be considered legitimate!

cps_ddi_file <- ipums_example("cps_00097.xml")

Chunked tabulation

Imagine we wanted to find the percent of people in the workforce grouped by their self-reported health. Since our example extract is small enough to fit in memory, we could load the full dataset with read_ipums_micro(), use lbl_relabel() to relabel the EMPSTAT variable into a binary variable, and count the people in each group.

read_ipums_micro(cps_ddi_file, verbose = FALSE) %>%
  mutate(
    HEALTH = as_factor(HEALTH),
    AT_WORK = as_factor(
      lbl_relabel(
        EMPSTAT,
        lbl(1, "Yes") ~ .lbl == "At work",
        lbl(0, "No") ~ .lbl != "At work"
      )
    )
  ) %>%
  group_by(HEALTH, AT_WORK) %>%
  summarize(n = n(), .groups = "drop")
#> # A tibble: 10 × 3
#>    HEALTH    AT_WORK     n
#>    <fct>     <fct>   <int>
#>  1 Excellent No       4055
#>  2 Excellent Yes      2900
#>  3 Very good No       3133
#>  4 Very good Yes      3371
#>  5 Good      No       2480
#>  6 Good      Yes      2178
#>  7 Fair      No       1123
#>  8 Fair      Yes       443
#>  9 Poor      No        603
#> 10 Poor      Yes        65

For the sake of this example, let’s imagine we can only store 1,000 rows in memory at a time. In this case, we need to use a chunked function, tabulate for each chunk, and then calculate the counts across all of the chunks.

The chunked functions will apply a user-defined callback function to each chunk. The callback takes two arguments: x, which represents the data contained in a given chunk, and pos, which represents the position of the chunk, expressed as the line in the input file at which the chunk starts. Generally you will only need to use x, but the callback must always take both arguments.

In this case, the callback will implement the same processing steps that we demonstrated above:

cb_function <- function(x, pos) {
  x %>%
    mutate(
      HEALTH = as_factor(HEALTH),
      AT_WORK = as_factor(
        lbl_relabel(
          EMPSTAT,
          lbl(1, "Yes") ~ .lbl == "At work",
          lbl(0, "No") ~ .lbl != "At work"
        )
      )
    ) %>%
    group_by(HEALTH, AT_WORK) %>%
    summarize(n = n(), .groups = "drop")
}

Next, we need to create a callback object, which will determine how we want to combine the ultimate results for each chunk. ipumsr provides three main types of callback objects that preserve variable metadata:

IpumsDataFrameCallback combines the results from each chunk together by row binding them together
IpumsListCallback returns a list with one item per chunk containing the results for that chunk. Use this when you don’t want to (or can’t) immediately combine the results.
IpumsSideEffectCallback does not return any results. Use this when your callback function is intended only for its side effects (for instance, if you are saving the results for each chunk to disk).

(ipumsr also provides a fourth callback used for running linear regression models discussed below).

In this case, we want to row-bind the data frames returned by cb_function(), so we use IpumsDataFrameCallback.

Callback objects are {R6} objects, but you don’t need to be familiar with R6 to use them.² To initialize a callback object, simply use $new():

cb <- IpumsDataFrameCallback$new(cb_function)

At this point, we’re ready to load the data in chunks. We use read_ipums_micro_chunked() to specify the callback and chunk size:

chunked_tabulations <- read_ipums_micro_chunked(
  cps_ddi_file,
  callback = cb,
  chunk_size = 1000,
  verbose = FALSE
)

chunked_tabulations
#> # A tibble: 209 × 3
#>    HEALTH    AT_WORK     n
#>    <fct>     <fct>   <int>
#>  1 Excellent No        183
#>  2 Excellent Yes       147
#>  3 Very good No        134
#>  4 Very good Yes       217
#>  5 Good      No        111
#>  6 Good      Yes       105
#>  7 Fair      No         53
#>  8 Fair      Yes        22
#>  9 Poor      No         27
#> 10 Poor      Yes         1
#> # ℹ 199 more rows

Now we have a data frame with the counts by health and work status within each chunk. To get the full table, we just need to sum by health and work status one more time:

chunked_tabulations %>%
  group_by(HEALTH, AT_WORK) %>%
  summarize(n = sum(n), .groups = "drop")
#> # A tibble: 10 × 3
#>    HEALTH    AT_WORK     n
#>    <fct>     <fct>   <int>
#>  1 Excellent No       4055
#>  2 Excellent Yes      2900
#>  3 Very good No       3133
#>  4 Very good Yes      3371
#>  5 Good      No       2480
#>  6 Good      Yes      2178
#>  7 Fair      No       1123
#>  8 Fair      Yes       443
#>  9 Poor      No        603
#> 10 Poor      Yes        65

Chunked regression

With the biglm package, it is possible to use R to perform a regression on data that is too large to store in memory all at once. The ipumsr package provides another callback designed to make this simple: IpumsBiglmCallback.

In this example, we’ll conduct a regression with total hours worked (AHRSWORKT) as the outcome and age (AGE) and self-reported health (HEALTH) as predictors. (Note that this is intended as a code demonstration, so we ignore many complexities that should be addressed in real analyses.)

If we were running the analysis on our full dataset, we’d first load our data and prepare the variables in our analysis for use in the model:

data <- read_ipums_micro(cps_ddi_file, verbose = FALSE) %>%
  mutate(
    HEALTH = as_factor(HEALTH),
    AHRSWORKT = lbl_na_if(AHRSWORKT, ~ .lbl == "NIU (Not in universe)"),
    AT_WORK = as_factor(
      lbl_relabel(
        EMPSTAT,
        lbl(1, "Yes") ~ .lbl == "At work",
        lbl(0, "No") ~ .lbl != "At work"
      )
    )
  ) %>%
  filter(AT_WORK == "Yes")

Then, we’d provide our model formula and data to lm:

model <- lm(AHRSWORKT ~ AGE + I(AGE^2) + HEALTH, data = data)
summary(model)
#> 
#> Call:
#> lm(formula = AHRSWORKT ~ AGE + I(AGE^2) + HEALTH, data = data)
#> 
#> Residuals:
#>     Min      1Q  Median      3Q     Max 
#> -41.217  -4.734  -0.077   5.957  63.994 
#> 
#> Coefficients:
#>                   Estimate Std. Error t value Pr(>|t|)    
#> (Intercept)      5.2440289  1.1823985   4.435 9.31e-06 ***
#> AGE              1.5868169  0.0573268  27.680  < 2e-16 ***
#> I(AGE^2)        -0.0170043  0.0006568 -25.888  < 2e-16 ***
#> HEALTHVery good -0.2550306  0.3276759  -0.778 0.436412    
#> HEALTHGood      -0.9637395  0.3704123  -2.602 0.009289 ** 
#> HEALTHFair      -3.8899430  0.6629725  -5.867 4.58e-09 ***
#> HEALTHPoor      -5.7597200  1.6197136  -3.556 0.000378 ***
#> ---
#> Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
#> 
#> Residual standard error: 12.88 on 8950 degrees of freedom
#> Multiple R-squared:  0.08711,    Adjusted R-squared:  0.0865 
#> F-statistic: 142.3 on 6 and 8950 DF,  p-value: < 2.2e-16

To do the same regression, but with only 1,000 rows loaded at a time, we work in a similar manner.

First we make an IpumsBiglmCallback callback object. We provide the model formula as well as the code used to process the data before running the regression:

library(biglm)
#> Loading required package: DBI

biglm_cb <- IpumsBiglmCallback$new(
  model = AHRSWORKT ~ AGE + I(AGE^2) + HEALTH,
  prep = function(x, pos) {
    x %>%
      mutate(
        HEALTH = as_factor(HEALTH),
        AHRSWORKT = lbl_na_if(AHRSWORKT, ~ .lbl == "NIU (Not in universe)"),
        AT_WORK = as_factor(
          lbl_relabel(
            EMPSTAT,
            lbl(1, "Yes") ~ .lbl == "At work",
            lbl(0, "No") ~ .lbl != "At work"
          )
        )
      ) %>%
      filter(AT_WORK == "Yes")
  }
)

And then we read the data using read_ipums_micro_chunked(), passing the callback that we just made.

chunked_model <- read_ipums_micro_chunked(
  cps_ddi_file,
  callback = biglm_cb,
  chunk_size = 1000,
  verbose = FALSE
)

summary(chunked_model)
#> Large data regression model: biglm(AHRSWORKT ~ AGE + I(AGE^2) + HEALTH, data, ...)
#> Sample size =  8957 
#>                    Coef    (95%     CI)     SE      p
#> (Intercept)      5.2440  2.8792  7.6088 1.1824 0.0000
#> AGE              1.5868  1.4722  1.7015 0.0573 0.0000
#> I(AGE^2)        -0.0170 -0.0183 -0.0157 0.0007 0.0000
#> HEALTHVery good -0.2550 -0.9104  0.4003 0.3277 0.4364
#> HEALTHGood      -0.9637 -1.7046 -0.2229 0.3704 0.0093
#> HEALTHFair      -3.8899 -5.2159 -2.5640 0.6630 0.0000
#> HEALTHPoor      -5.7597 -8.9991 -2.5203 1.6197 0.0004

Reading yielded data

In addition to chunked reading, ipumsr also provides the similar but more flexible “yielded” reading.

read_ipums_micro_yield() and read_ipums_micro_list_yield() grant you more freedom in determining what R code to run between chunks and include the ability to have multiple files open at once. Additionally, yields are compatible with the bigglm function from biglm, which allows you to run glm models on data larger than memory.

The downside to this greater control is that yields have an API that is unique to IPUMS data and the way they work is unusual for R code.

Yielded tabulation

We’ll compare the yield and chunked functions by conducting the same tabulation example from above using yields.

First, we create the yield object with the function read_ipums_micro_yield():

data <- read_ipums_micro_yield(cps_ddi_file, verbose = FALSE)

This function returns an R6 object which contains methods for reading the data. The most important method is the yield() method which will return n rows of data:

# Return the first 10 rows of data
data$yield(10)
#> # A tibble: 10 × 14
#>     YEAR SERIAL MONTH      CPSID ASECFLAG ASECWTH FOODSTMP PERNUM  CPSIDP ASECWT
#>    <dbl>  <dbl> <int+lb>   <dbl> <int+lb>   <dbl> <int+lb>  <dbl>   <dbl>  <dbl>
#>  1  2011     33 3 [Marc… 2.01e13 1 [ASEC]    308. 1 [No]        1 2.01e13   308.
#>  2  2011     33 3 [Marc… 2.01e13 1 [ASEC]    308. 1 [No]        2 2.01e13   217.
#>  3  2011     33 3 [Marc… 2.01e13 1 [ASEC]    308. 1 [No]        3 2.01e13   249.
#>  4  2011     46 3 [Marc… 2.01e13 1 [ASEC]    266. 1 [No]        1 2.01e13   266.
#>  5  2011     46 3 [Marc… 2.01e13 1 [ASEC]    266. 1 [No]        2 2.01e13   266.
#>  6  2011     46 3 [Marc… 2.01e13 1 [ASEC]    266. 1 [No]        3 2.01e13   265.
#>  7  2011     46 3 [Marc… 2.01e13 1 [ASEC]    266. 1 [No]        4 2.01e13   296.
#>  8  2011     64 3 [Marc… 2.01e13 1 [ASEC]    241. 1 [No]        1 2.01e13   241.
#>  9  2011     64 3 [Marc… 2.01e13 1 [ASEC]    241. 1 [No]        2 2.01e13   241.
#> 10  2011     64 3 [Marc… 2.01e13 1 [ASEC]    241. 1 [No]        3 2.01e13   278.
#> # ℹ 4 more variables: AGE <int+lbl>, EMPSTAT <int+lbl>, AHRSWORKT <dbl+lbl>,
#> #   HEALTH <int+lbl>

Note that the row position in the data is stored in the object, so running the same code again will produce different rows of data:

# Return the next 10 rows of data
data$yield(10)
#> # A tibble: 10 × 14
#>     YEAR SERIAL MONTH      CPSID ASECFLAG ASECWTH FOODSTMP PERNUM  CPSIDP ASECWT
#>    <dbl>  <dbl> <int+lb>   <dbl> <int+lb>   <dbl> <int+lb>  <dbl>   <dbl>  <dbl>
#>  1  2011     82 3 [Marc… 0       1 [ASEC]    373. 1 [No]        1 0         373.
#>  2  2011     82 3 [Marc… 0       1 [ASEC]    373. 1 [No]        2 0         373.
#>  3  2011     82 3 [Marc… 0       1 [ASEC]    373. 1 [No]        3 0         326.
#>  4  2011     86 3 [Marc… 2.01e13 1 [ASEC]    554. 1 [No]        1 2.01e13   554.
#>  5  2011    104 3 [Marc… 2.01e13 1 [ASEC]    543. 1 [No]        1 2.01e13   543.
#>  6  2011    104 3 [Marc… 2.01e13 1 [ASEC]    543. 1 [No]        2 2.01e13   543.
#>  7  2011    106 3 [Marc… 2.01e13 1 [ASEC]    543. 1 [No]        1 2.01e13   543.
#>  8  2011    137 3 [Marc… 2.01e13 1 [ASEC]    271. 1 [No]        1 2.01e13   271.
#>  9  2011    137 3 [Marc… 2.01e13 1 [ASEC]    271. 1 [No]        2 2.01e13   271.
#> 10  2011    137 3 [Marc… 2.01e13 1 [ASEC]    271. 1 [No]        3 2.01e13   365.
#> # ℹ 4 more variables: AGE <int+lbl>, EMPSTAT <int+lbl>, AHRSWORKT <dbl+lbl>,
#> #   HEALTH <int+lbl>

Use cur_pos to get the current position in the data file:

data$cur_pos
#> [1] 21

The is_done() method tells us whether we have read the entire file yet:

data$is_done()
#> [1] FALSE

In preparation for our actual example, we’ll use reset() to reset to the beginning of the data:

data$reset()

Using yield() and is_done(), we can set up our processing pipeline. First, we create an empty placeholder tibble to store our results:

yield_results <- tibble(
  HEALTH = factor(levels = c("Excellent", "Very good", "Good", "Fair", "Poor")),
  AT_WORK = factor(levels = c("No", "Yes")),
  n = integer(0)
)

Then, we iterate through the data, yielding 1,000 rows at a time and processing the results as we did in the chunked example. The iteration will end when we’ve finished reading the entire file.

while (!data$is_done()) {
  # Yield new data and process
  new <- data$yield(n = 1000) %>%
    mutate(
      HEALTH = as_factor(HEALTH),
      AT_WORK = as_factor(
        lbl_relabel(
          EMPSTAT,
          lbl(1, "Yes") ~ .lbl == "At work",
          lbl(0, "No") ~ .lbl != "At work"
        )
      )
    ) %>%
    group_by(HEALTH, AT_WORK) %>%
    summarize(n = n(), .groups = "drop")

  # Combine the new yield with the previously processed yields
  yield_results <- bind_rows(yield_results, new) %>%
    group_by(HEALTH, AT_WORK) %>%
    summarize(n = sum(n), .groups = "drop")
}

yield_results
#> # A tibble: 10 × 3
#>    HEALTH    AT_WORK     n
#>    <fct>     <fct>   <int>
#>  1 Excellent No       4055
#>  2 Excellent Yes      2900
#>  3 Very good No       3133
#>  4 Very good Yes      3371
#>  5 Good      No       2480
#>  6 Good      Yes      2178
#>  7 Fair      No       1123
#>  8 Fair      Yes       443
#>  9 Poor      No        603
#> 10 Poor      Yes        65

Yielded GLM regression

One of the major benefits of the yielded reading over chunked reading is that it is compatible with the GLM functions from biglm, allowing for the use of more complicated models.

To run a logistic regression, we first need to reset our yield object from the previous example:

data$reset()

Next we make a function that takes a single argument: reset. When reset is TRUE, it resets the data to the beginning. This is dictated by bigglm from biglm.

To create this function, we use the the reset() method from the yield object:

get_model_data <- function(reset) {
  if (reset) {
    data$reset()
  } else {
    yield <- data$yield(n = 1000)

    if (is.null(yield)) {
      return(yield)
    }

    yield %>%
      mutate(
        HEALTH = as_factor(HEALTH),
        WORK30PLUS = lbl_na_if(AHRSWORKT, ~ .lbl == "NIU (Not in universe)") >= 30,
        AT_WORK = as_factor(
          lbl_relabel(
            EMPSTAT,
            lbl(1, "Yes") ~ .lbl == "At work",
            lbl(0, "No") ~ .lbl != "At work"
          )
        )
      ) %>%
      filter(AT_WORK == "Yes")
  }
}

Finally we feed this function and a model specification to the bigglm() function:

results <- bigglm(
  WORK30PLUS ~ AGE + I(AGE^2) + HEALTH,
  family = binomial(link = "logit"),
  data = get_model_data
)

summary(results)
#> Large data regression model: bigglm(WORK30PLUS ~ AGE + I(AGE^2) + HEALTH, family = binomial(link = "logit"), 
#>     data = get_model_data)
#> Sample size =  8957 
#>                    Coef    (95%     CI)     SE      p
#> (Intercept)     -4.0021 -4.4297 -3.5744 0.2138 0.0000
#> AGE              0.2714  0.2498  0.2930 0.0108 0.0000
#> I(AGE^2)        -0.0029 -0.0032 -0.0027 0.0001 0.0000
#> HEALTHVery good  0.0038 -0.1346  0.1423 0.0692 0.9557
#> HEALTHGood      -0.1129 -0.2685  0.0426 0.0778 0.1465
#> HEALTHFair      -0.6637 -0.9160 -0.4115 0.1261 0.0000
#> HEALTHPoor      -0.7879 -1.3697 -0.2062 0.2909 0.0068

Option 4: Use a database

Storing your data in a database is another way to work with data that cannot fit into memory as a data frame. If you have access to a database on a remote machine, then you can easily select and use parts of the data for your analysis. Even databases on your own machine may provide more efficient data storage or use your hard drive, enabling the data to be loaded into R.

There are many different kinds of databases, each with their own benefits and drawbacks, and the database you choose to use will be specific to your use case. However, once you’ve chosen a database, there will be two general steps:

Importing data into the database
Connecting the database to R

R has several tools that support database integration, including {DBI}, {dbplyr}, {sparklyr}, {bigrquery}, and others. In this example, we’ll use {RSQLite} to load the data into an in-memory database. (We use RSQLite because it is easy to set up, but it is likely not efficient enough to fully resolve issues with large IPUMS data, so it may be wise to consider an alternative in practice.)

Importing data into the database

For rectangular extracts, it is likely simplest to load your data into the database in CSV format, which is widely supported. If you are working with a hierarchical extract (or your database software doesn’t support CSV format), then you can use an ipumsr chunked function to load the data into a database without needing to store the entire dataset in R.

See the IPUMS data reading vignette for more about rectangular vs. hierarchical extracts.

library(DBI)
library(RSQLite)

# Connect to database
con <- dbConnect(SQLite(), path = ":memory:")

# Load file metadata
ddi <- read_ipums_ddi(cps_ddi_file)

# Write data to database in chunks
read_ipums_micro_chunked(
  ddi,
  readr::SideEffectChunkCallback$new(
    function(x, pos) {
      if (pos == 1) {
        dbWriteTable(con, "cps", x)
      } else {
        dbWriteTable(con, "cps", x, row.names = FALSE, append = TRUE)
      }
    }
  ),
  chunk_size = 1000,
  verbose = FALSE
)

Connecting to a database with dbplyr

There are a variety of ways to access your data once it is stored in the database. In this example, we use dbplyr. For more details about dbplyr, see vignette("dbplyr", package = "dbplyr").

To run a simple query for AGE, we can use the same syntax we would use with dplyr:

example <- tbl(con, "cps")

example %>%
  filter("AGE" > 25)
#> # Source:   SQL [?? x 14]
#> # Database: sqlite 3.46.0 []
#>     YEAR SERIAL MONTH   CPSID ASECFLAG ASECWTH FOODSTMP PERNUM  CPSIDP ASECWT
#>    <dbl>  <dbl> <int>   <dbl>    <int>   <dbl>    <int>  <dbl>   <dbl>  <dbl>
#>  1  2011     33     3 2.01e13        1    308.        1      1 2.01e13   308.
#>  2  2011     33     3 2.01e13        1    308.        1      2 2.01e13   217.
#>  3  2011     33     3 2.01e13        1    308.        1      3 2.01e13   249.
#>  4  2011     46     3 2.01e13        1    266.        1      1 2.01e13   266.
#>  5  2011     46     3 2.01e13        1    266.        1      2 2.01e13   266.
#>  6  2011     46     3 2.01e13        1    266.        1      3 2.01e13   265.
#>  7  2011     46     3 2.01e13        1    266.        1      4 2.01e13   296.
#>  8  2011     64     3 2.01e13        1    241.        1      1 2.01e13   241.
#>  9  2011     64     3 2.01e13        1    241.        1      2 2.01e13   241.
#> 10  2011     64     3 2.01e13        1    241.        1      3 2.01e13   278.
#> # ℹ more rows
#> # ℹ 4 more variables: AGE <int>, EMPSTAT <int>, AHRSWORKT <dbl>, HEALTH <int>

dbplyr shows us a nice preview of the first rows of the result of our query, but the data still exist only in the database. You can use dplyr::collect() to load the full results of the query into the current R session. However, this would omit the variable metadata attached to IPUMS data, since the database doesn’t store this metadata:

data <- example %>%
  filter("AGE" > 25) %>%
  collect()

# Variable metadata is missing
ipums_val_labels(data$MONTH)
#> # A tibble: 0 × 2
#> # ℹ 2 variables: val <dbl>, lbl <chr>

Instead, use ipums_collect(), which uses a provided ipums_ddi object to reattach the metadata while loading into the R environment:

data <- example %>%
  filter("AGE" > 25) %>%
  ipums_collect(ddi)

ipums_val_labels(data$MONTH)
#> # A tibble: 12 × 2
#>      val lbl      
#>    <int> <chr>    
#>  1     1 January  
#>  2     2 February 
#>  3     3 March    
#>  4     4 April    
#>  5     5 May      
#>  6     6 June     
#>  7     7 July     
#>  8     8 August   
#>  9     9 September
#> 10    10 October  
#> 11    11 November 
#> 12    12 December

See the value labels vignette more about variable metadata in IPUMS data.

Learning more

Big data isn’t just a problem for IPUMS users, so there are many R resources available.

See the documentation for the packages mentioned in the databases section for more information about those options.

For some past blog posts and articles on the topic, see the following:

Big Data in R - Part of Stephen Mooney’s EPIC: Epidemiologic Analysis Using R, June 2015 class
Statistical Analysis with Open-Source R and RStudio on Amazon EMR - Markus Schmidberger on the AWS Big Data Blog
Hosting RStudio Server on Azure - Colin Gillespie’s blog post on using Rstudio on Azure
Improving DBI: A Retrospect - Kirill Müller’s report on the R Consortium grant to improve database support in R

Bonus joke: why is the IPUMS website better than any grocery store? More free samples.↩︎
If you’re interested in learning more about R6, check out Hadley Wickham’s Advanced R book, which is available for free online.↩︎

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.