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Calculation of key bacterial growth curve parameters using fourth degree polynomial functions. Six growth curve parameters are provided including peak growth rate, doubling time, lag time, maximum growth, and etc. 'ipolygrowth' takes time series data from individual biological samples (with technical replicates) or multiple samples.
Version: | 0.1.2 |
Depends: | R (≥ 3.4.0) |
Imports: | dplyr, magrittr, rlang, tidyr, tidyselect |
Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0), growthrates, kableExtra, ggplot2 |
Published: | 2023-07-20 |
DOI: | 10.32614/CRAN.package.ipolygrowth |
Author: | Jifan Wang |
Maintainer: | Jifan Wang <jifan.wang at tufts.edu> |
BugReports: | https://github.com/kivanvan/ipolygrowth/issues |
License: | GPL (≥ 3) |
URL: | https://github.com/kivanvan/ipolygrowth |
NeedsCompilation: | no |
Materials: | README |
CRAN checks: | ipolygrowth results |
Reference manual: | ipolygrowth.pdf |
Vignettes: |
Using ipolygrowth for bacterial growth estimation |
Package source: | ipolygrowth_0.1.2.tar.gz |
Windows binaries: | r-devel: ipolygrowth_0.1.2.zip, r-release: ipolygrowth_0.1.2.zip, r-oldrel: ipolygrowth_0.1.2.zip |
macOS binaries: | r-release (arm64): ipolygrowth_0.1.2.tgz, r-oldrel (arm64): ipolygrowth_0.1.2.tgz, r-release (x86_64): ipolygrowth_0.1.2.tgz, r-oldrel (x86_64): ipolygrowth_0.1.2.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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