The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
ieegio:
IO toolbox for Intracranial Electroencephalography
The goal of ieegio is to provide integrated toolbox for
common file formats used in intracranial Electroencephalography (iEEG)
and deep-brain stimulation (DBS). Currently the package is under active
development.
You can install the development version of ieegio from
GitHub with:
# install.packages("pak")
pak::pak("dipterix/ieegio")ieegio provides additional sample data. To download
them:
# list all the sample data
sample_names <- ieegio::ieegio_sample_data()
lapply(sample_names, ieegio::ieegio_sample_data)ephys data (examples)The following formats have been (or will be) supported. Please feel free to make a wish-list by posting an issue in this repository.
Electrophysiology
| Name | Common Extensions | Read | Write |
|---|---|---|---|
| EDF(+)/BDF(+) (European Data Format) | *.edf |
read_edf |
|
| BrainVision | *.vhdr,
*.vmrk, *.eeg, *.dat |
read_brainvis |
|
| BCI2000 | *.dat |
read_bci2000 |
|
| NEV/NSx (BlackRock neural-event/signal) | *.nev, *.ns1,
*.ns2, …, *.ns6 |
read_nsx |
|
| NWB (Neurodata Without Borders) | *.nwb |
read_nwb |
* |
| MEF | *.mef |
* - NWB format only has low-level support
due to its format nature. Please see examples with
help(read_nwb)
Imaging
| Name | Common Extensions | Read | Write |
|---|---|---|---|
| NIfTI (Neuroimaging Informatics Technology Initiative) | *.nii[.gz] |
read_volume
(io_read_nii) |
write_volume
(io_write_nii) |
| MGH/MGZ (Massachusetts General Hospital format) | *.mgh,
*.mgz |
read_volume
(io_read_mgz) |
write_volume
(io_write_mgz) |
| GIfTI (Geometry format under the NIfTI) | *.gii[.gz] |
read_surface
(io_read_gii) |
write_surface
(io_write_gii) |
| FreeSurfer surface | e.g. *h.pial,
*h.white |
read_surface
(io_read_fs(type="geometry")) |
write_surface(format="freesurfer", type="geometry") |
| FreeSurfer node values/weights | e.g. *h.curv,
*h.sulc |
read_surface
(io_read_fs(type="measurements")) |
write_surface(format="freesurfer", type="measurements") |
| Surface annotation | *.annot |
read_surface
(io_read_fs(type="annotations")) |
write_surface(format="freesurfer", type="annotations") |
| Name | Common Extensions | Read | Write |
|---|---|---|---|
| Matlab | *.mat |
io_read_mat |
io_write_mat |
| HDF5 | *.h5 |
io_read_h5 |
io_write_h5 |
| YAML | *.yml,
*.yaml |
io_read_yaml |
io_write_yaml |
| JSON | *.json |
io_read_json |
io_write_json |
| INI | *.ini |
io_read_ini |
|
| FST | *.fst |
io_read_fst |
io_write_fst |
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.