Package {hyper.gam}

Type:	Package
Title:	Generalized Additive Models with Hyper Column
Version:	0.3.2
Date:	2026-06-20
Description:	An interactive HTML widget of the perspective plot for generalized additive models. An alternative solution of the function mgcv::vis.gam(). This R package author has retired from academic research. Accordingly, this package should not be considered a validated tool for use in peer-reviewed publications or as the basis for grant applications. Backward compatibility with user-code published in <doi:10.1093/bioinformatics/btaf182> and <doi:10.1093/bioinformatics/btaf430> is not maintained in versions >= 0.3.0 of this package. The authors of those publications are the appropriate contacts for reproducibility inquiries.
Encoding:	UTF-8
License:	GPL-2
Language:	en-US
URL:	https://github.com/tingtingzhan/hyper.gam, https://tingtingzhan-btaf430.netlify.app
Depends:	R (≥ 4.6)
Imports:	cli, mgcv, plotly
Suggests:	htmlwidgets
Config/roxygen2/version:	8.0.0
Config/roxygen2/markdown:	TRUE
NeedsCompilation:	no
Packaged:	2026-06-18 21:17:41 UTC; tingtingzhan
Author:	Tingting Zhan [aut, cre], Erjia Cui [ctb] (up to v0.2.3)
Maintainer:	Tingting Zhan <tingtingzhan@gmail.com>
Repository:	CRAN
Date/Publication:	2026-06-19 15:50:14 UTC

hyper.gam: Generalized Additive Models with Hyper Column

Description

An interactive HTML widget of the perspective plot for generalized additive models. An alternative solution of the function mgcv::vis.gam(). This R package author has retired from academic research. Accordingly, this package should not be considered a validated tool for use in peer-reviewed publications or as the basis for grant applications. Backward compatibility with user-code published in doi:10.1093/bioinformatics/btaf182 and doi:10.1093/bioinformatics/btaf430 is not maintained in versions >= 0.3.0 of this package. The authors of those publications are the appropriate contacts for reproducibility inquiries.

Note

This R package author has retired from academic research.

Accordingly, this package should not be considered a validated tool for use in peer-reviewed publications or as the basis for grant applications.

Backward compatibility with user-code published in the following publications is not maintained in versions ⁠>= 0.3.0⁠ of this package. The authors of those publications are the appropriate contacts for reproducibility inquiries.

doi:10.1093/bioinformatics/btaf182

doi:10.1093/bioinformatics/btaf430

Author(s)

Maintainer: Tingting Zhan tingtingzhan@gmail.com (ORCID)

Authors:

• Tingting Zhan tingtingzhan@gmail.com (ORCID)

Other contributors:

• Erjia Cui ecui@umn.edu (ORCID) (up to v0.2.3) [contributor]

See Also

Useful links:

• https://github.com/tingtingzhan/hyper.gam

• https://tingtingzhan-btaf430.netlify.app

Alternative of vis.gam

Description

An interactive htmlwidgets of the perspective plot for gam model(s) using the package plotly.

Usage

widget_gam(
  ...,
  formula,
  newdata = data,
  proj_xy = TRUE,
  proj_xz = TRUE,
  n = 501L,
  newid = seq_len(min(3L, nrow(newdata))),
  ylim = range(X[is.finite(X)], newX[is.finite(newX)]),
  colorscale
)

Arguments

Value

The function widget_gam() returns a pretty htmlwidgets created by R package plotly.

Note

The maintainer is not aware of any functionality of projection of arbitrary curves in package plotly. Currently, the projections are hard coded.

Examples

library(mgcv)
# ?s
# ?ti