To cite the 'hsphase' package in publications, please use:

Ferdosi M, Kinghorn B, van der Werf J, Lee S, Gondro C (2014). “hsphase: an R package for pedigree reconstruction, detection of recombination events, phasing and imputation of half-sib family groups.” BMC Bioinformatics, 15(1), 172. doi:10.1186/1471-2105-15-172, https://link.springer.com/article/10.1186/1471-2105-15-172.

Ferdosi M, Kinghorn B, van der Werf J, Gondro C (2014). “Detection of recombination events, haplotype reconstruction and imputation of sires using half-sib SNP genotypes.” Genetics Selection Evolution, 46(1), 11. doi:10.1186/1297-9686-46-11, PMID: 24495596, https://link.springer.com/article/10.1186/1297-9686-46-11.

Ferdosi M, Boerner V (2014). “A fast method for evaluating opposing homozygosity in large SNP data sets.” Livestock Science, 166, 35-37. doi:10.1016/j.livsci.2014.05.026, Genomics Applied to Livestock Production.

Sahoo S, Ferdosi M, van der Werf J, de las Heras-Saldana S (2025). “Proc. Assoc. Advmt. Anim. Breed. Genet.” Proc. Assoc. Advmt. Anim. Breed. Genet., 26, 323.

Ferdosi M, Gondro C (2014). hsphase: Phasing, pedigree reconstruction, sire imputation and recombination events for half-sib families.

Corresponding BibTeX entries:

  @Article{,
    title = {hsphase: an R package for pedigree reconstruction,
      detection of recombination events, phasing and imputation of
      half-sib family groups},
    author = {Mohammad H. Ferdosi and Brian P. Kinghorn and Julius H.
      J. {van der Werf} and Seung Hwan Lee and Cedric Gondro},
    journal = {BMC Bioinformatics},
    year = {2014},
    volume = {15},
    number = {1},
    pages = {172},
    doi = {10.1186/1471-2105-15-172},
    url = {https://link.springer.com/article/10.1186/1471-2105-15-172},
  }

  @Article{,
    title = {Detection of recombination events, haplotype
      reconstruction and imputation of sires using half-sib SNP
      genotypes},
    author = {Mohammad H. Ferdosi and Brian P. Kinghorn and Julius H.
      J. {van der Werf} and Cedric Gondro},
    journal = {Genetics Selection Evolution},
    year = {2014},
    volume = {46},
    number = {1},
    pages = {11},
    doi = {10.1186/1297-9686-46-11},
    url = {https://link.springer.com/article/10.1186/1297-9686-46-11},
    note = {PMID: 24495596},
  }

  @Article{,
    title = {A fast method for evaluating opposing homozygosity in
      large SNP data sets},
    author = {Mohammad H. Ferdosi and Vinzent Boerner},
    journal = {Livestock Science},
    year = {2014},
    volume = {166},
    pages = {35-37},
    note = {Genomics Applied to Livestock Production},
    doi = {10.1016/j.livsci.2014.05.026},
  }

  @Article{,
    title = {Proc. Assoc. Advmt. Anim. Breed. Genet.},
    author = {Shweta Sahoo and Mohammad H. Ferdosi and Julius H. J.
      {van der Werf} and Sara {de las Heras-Saldana}},
    journal = {Proc. Assoc. Advmt. Anim. Breed. Genet.},
    year = {2025},
    volume = {26},
    pages = {323},
  }

  @Manual{,
    title = {hsphase: Phasing, pedigree reconstruction, sire imputation
      and recombination events for half-sib families},
    author = {Mohammad H. Ferdosi and Cedric Gondro},
    year = {2014},
  }