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A wrapper for the homologene database by the National Center for Biotechnology Information ('NCBI'). It allows searching for gene homologs across species. Data in this package can be found at <ftp://ftp.ncbi.nih.gov/pub/HomoloGene/build68/>. The package also includes an updated version of the homologene database where gene identifiers and symbols are replaced with their latest (at the time of submission) version and functions to fetch latest annotation data to keep updated.
| Version: | 1.4.68.19.3.27 |
| Depends: | R (≥ 3.1.2) |
| Imports: | dplyr (≥ 0.7.4), magrittr (≥ 1.5), purrr (≥ 0.2.5), readr (≥ 1.3.1), R.utils (≥ 2.8.0) |
| Suggests: | testthat (≥ 1.0.2) |
| Published: | 2019-03-28 |
| DOI: | 10.32614/CRAN.package.homologene |
| Author: | Ogan Mancarci [aut, cre], Leon French [ctb] |
| Maintainer: | Ogan Mancarci <ogan.mancarci at gmail.com> |
| BugReports: | https://github.com/oganm/homologene/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/oganm/homologene |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | homologene results |
| Reference manual: | homologene.pdf |
| Package source: | homologene_1.4.68.19.3.27.tar.gz |
| Windows binaries: | r-devel: homologene_1.4.68.19.3.27.zip, r-release: homologene_1.4.68.19.3.27.zip, r-oldrel: homologene_1.4.68.19.3.27.zip |
| macOS binaries: | r-release (arm64): homologene_1.4.68.19.3.27.tgz, r-oldrel (arm64): homologene_1.4.68.19.3.27.tgz, r-release (x86_64): homologene_1.4.68.19.3.27.tgz, r-oldrel (x86_64): homologene_1.4.68.19.3.27.tgz |
| Old sources: | homologene archive |
| Reverse imports: | CoSIA, orthogene |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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