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Estimates hierarchical F-statistics from haploid or diploid genetic data with any numbers of levels in the hierarchy, following the algorithm of Yang (Evolution(1998), 52:950). Tests via randomisations the significance of each F and variance components, using the likelihood-ratio statistics G (Goudet et al. (1996) <https://academic.oup.com/genetics/article/144/4/1933/6017091>). Estimates genetic diversity statistics for haploid and diploid genetic datasets in various formats, including inbreeding and coancestry coefficients, and population specific F-statistics following Weir and Goudet (2017) <https://academic.oup.com/genetics/article/206/4/2085/6072590>.
| Version: | 0.5-11 |
| Depends: | R (≥ 2.10) |
| Imports: | ade4, adegenet, gaston, gtools, methods |
| Suggests: | ape, pegas, knitr, rmarkdown, testthat |
| Published: | 2022-05-05 |
| DOI: | 10.32614/CRAN.package.hierfstat |
| Author: | Jerome Goudet [aut, cre], Thibaut Jombart [aut], Zhian N. Kamvar [ctb], Eric Archer [ctb], Olivier Hardy [ctb] |
| Maintainer: | Jerome Goudet <jerome.goudet at unil.ch> |
| BugReports: | https://github.com/jgx65/hierfstat/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://www.r-project.org, https://github.com/jgx65/hierfstat |
| NeedsCompilation: | no |
| CRAN checks: | hierfstat results |
| Reference manual: | hierfstat.pdf |
| Vignettes: |
Hierfstat latest features Importing data in Hierfstat |
| Package source: | hierfstat_0.5-11.tar.gz |
| Windows binaries: | r-devel: hierfstat_0.5-11.zip, r-release: hierfstat_0.5-11.zip, r-oldrel: hierfstat_0.5-11.zip |
| macOS binaries: | r-release (arm64): hierfstat_0.5-11.tgz, r-oldrel (arm64): hierfstat_0.5-11.tgz, r-release (x86_64): hierfstat_0.5-11.tgz, r-oldrel (x86_64): hierfstat_0.5-11.tgz |
| Old sources: | hierfstat archive |
| Reverse imports: | dartR.sim, GenomeAdmixR, graph4lg, wingen |
| Reverse suggests: | adegenet, dartR, dartR.base |
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