hestia: Bayesian Compartmental Infection Models from Individual Outcomes
Fit Bayesian compartmental infection models (such as susceptible-infected-recovered and multi-compartment hidden Markov variants) from individual-level outcome data. Models are composed from infection-process and observation-process components and fit using Stan via 'rstan'.
| Version: | 0.1.0 |
| Depends: | R (≥ 4.1.0) |
| Imports: | checkmate, dplyr, flexstanr (≥ 0.2.0), methods, posterior, Rcpp (≥ 0.12.0), RcppParallel (≥ 5.0.1), rstan (≥ 2.18.1), rstantools (≥ 2.5.0), stats, tidyr |
| LinkingTo: | BH (≥ 1.66.0), Rcpp (≥ 0.12.0), RcppEigen (≥ 0.3.3.3.0), RcppParallel (≥ 5.0.1), rstan (≥ 2.18.1), StanHeaders (≥ 2.18.0) |
| Suggests: | bayesplot, ggplot2, knitr, lintr, patchwork, pkgload, rmarkdown, roxygen2, roxyglobals, spelling, testthat (≥ 3.0.0), withr |
| Published: | 2026-10-20 |
| DOI: | 10.32614/CRAN.package.hestia (may not be active yet) |
| Author: | Claire Perrin Smith
 [aut, cre],
Jack Goodall [aut] |
| Maintainer: | Claire Perrin Smith <clairesmith6995 at gmail.com> |
| BugReports: | https://github.com/ACCIDDA/hestia/issues |
| License: | MIT + file LICENSE |
| URL: | https://accidda.github.io/hestia/, https://github.com/ACCIDDA/hestia |
| NeedsCompilation: | yes |
| SystemRequirements: | GNU make |
| Language: | en-US |
| Citation: | hestia citation info |
| Materials: | README, NEWS |
| CRAN checks: | hestia results |
Documentation:
| Reference manual: | hestia.html , hestia.pdf |
| Vignettes: |
Basic SIR Model (source, R code) Multiple Infection Compartments (source, R code) Parallel and threaded fitting (including HPC) (source, R code) |
Downloads:
| Package source: | hestia_0.1.0.tar.gz |
| Windows binaries: | r-devel: not available, r-release: hestia_0.1.0.zip, r-oldrel: hestia_0.1.0.zip |
| macOS binaries: | r-release (arm64): hestia_0.1.0.tgz, r-oldrel (arm64): hestia_0.1.0.tgz, r-release (x86_64): hestia_0.1.0.tgz, r-oldrel (x86_64): hestia_0.1.0.tgz |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=hestia to link to this page.