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hapassoc: Inference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm

The following R functions are used for inference of trait associations with haplotypes and other covariates in generalized linear models. The functions are developed primarily for data collected in cohort or cross-sectional studies. They can accommodate uncertain haplotype phase and handle missing genotypes at some SNPs.

Version: 1.2-9
Depends: R (≥ 2.6.0), stats
Published: 2022-05-25
DOI: 10.32614/CRAN.package.hapassoc
Author: K. Burkett, B. McNeney, J. Graham, with code for case-control data contributed by Zhijian Chen
Maintainer: K. Burkett <kburkett at uottawa.ca>
License: GPL-2
URL: https://sfustatgen.github.io/research/hapassoc.html
NeedsCompilation: yes
Citation: hapassoc citation info
Materials: ChangeLog
In views: MissingData
CRAN checks: hapassoc results

Documentation:

Reference manual: hapassoc.pdf
Vignettes: hapassoc

Downloads:

Package source: hapassoc_1.2-9.tar.gz
Windows binaries: r-devel: hapassoc_1.2-9.zip, r-release: hapassoc_1.2-9.zip, r-oldrel: hapassoc_1.2-9.zip
macOS binaries: r-release (arm64): hapassoc_1.2-9.tgz, r-oldrel (arm64): hapassoc_1.2-9.tgz, r-release (x86_64): hapassoc_1.2-9.tgz, r-oldrel (x86_64): hapassoc_1.2-9.tgz
Old sources: hapassoc archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=hapassoc to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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