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The following R functions are used for inference of trait associations with haplotypes and other covariates in generalized linear models. The functions are developed primarily for data collected in cohort or cross-sectional studies. They can accommodate uncertain haplotype phase and handle missing genotypes at some SNPs.
| Version: | 1.2-9 |
| Depends: | R (≥ 2.6.0), stats |
| Published: | 2022-05-25 |
| Author: | K. Burkett, B. McNeney, J. Graham, with code for case-control data contributed by Zhijian Chen |
| Maintainer: | K. Burkett <kburkett at uottawa.ca> |
| License: | GPL-2 |
| URL: | https://sfustatgen.github.io/research/hapassoc.html |
| NeedsCompilation: | yes |
| Citation: | hapassoc citation info |
| Materials: | ChangeLog |
| In views: | MissingData |
| CRAN checks: | hapassoc results |
| Reference manual: | hapassoc.pdf |
| Vignettes: |
hapassoc |
| Package source: | hapassoc_1.2-9.tar.gz |
| Windows binaries: | r-devel: hapassoc_1.2-9.zip, r-release: hapassoc_1.2-9.zip, r-oldrel: hapassoc_1.2-9.zip |
| macOS binaries: | r-release (arm64): hapassoc_1.2-9.tgz, r-oldrel (arm64): hapassoc_1.2-9.tgz, r-release (x86_64): hapassoc_1.2-9.tgz, r-oldrel (x86_64): hapassoc_1.2-9.tgz |
| Old sources: | hapassoc archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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