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traits()study_to_association(), study_to_variant(),
study_to_trait(), association_to_study(),
association_to_variant(),
association_to_trait(), variant_to_study(),
variant_to_association(), variant_to_trait(),
trait_to_study(), trait_to_association(), and
trait_to_variant().genomic_contexts of object variants
includes now the column is_mapped_gene.open_in_gwas_catalog().BiocCheck::BiocCheck()).get_variants() can now use the
cytogenetic_band criterion.cytogenetic_bands.remotes package.badger.get_variants() now accepts a new parameter:
std_chromosomes_only. This allows to select whether
variants mapped to scaffolds other than the standard chromosomes are
returned. By default, now, get_variants() only returns
variants mapped to chromosomes 1 thru 22, X, Y, or MT. This behaviour is
now in line with results returned by the Web UI.multiple_snp_haplotype and
snp_interaction. NA values in columns
multiple_snp_haplotype and snp_interaction of
associations tibble in associations S4 object were being mapped to
character type instead of logical. This is now fixed.association_id in the S4 class
associations from integer() to
character(). This saves us from unnecessary coercions from
integer to character when searching by association identifiers.exists_variant().open_in_dbsnp() and
open_in_gtex().These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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