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To cite the graphsim package in publications use:

Kelly S, Black M (2025). graphsim: An R package for simulating gene expression data from graph structures of biological pathways. R package version 1.0.4, https://CRAN.R-project.org/package=graphsim.

Please also cite the publication describing use of this package where appropriate. Kelly, S.T. and Black, M.A. (2020). graphsim: An R package for simulating gene expression data from graph structures of biological pathways. Journal of Open Source Software, 5(51), 2161, https://doi.org/10.21105/joss.02161 @article{Kelly2020joss02161, doi = {10.21105/joss.02161}, url = {https://doi.org/10.21105/joss.02161}, year = {2020}, publisher = {The Open Journal}, volume = {5}, number = {51}, pages = {2161}, author = {S. Thomas Kelly and Michael A. Black}, title = {graphsim: An R package for simulating gene expression data from graph structures of biological pathways}, journal = {Journal of Open Source Software} }

Corresponding BibTeX entry: 

  @Manual{,
    title = {graphsim: An R package for simulating gene expression data
      from graph structures of biological pathways},
    author = {S. Thomas Kelly and Michael A. Black},
    year = {2025},
    note = {R package version 1.0.4},
    url = {https://CRAN.R-project.org/package=graphsim},
  }

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