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– Major changes - Removal of diveRsity dependency - Removal of mat_pw_gst and mat_pw_d_jost - Update of mat_gen_dist to depend on hierfstat package - Creation of graphab_interpol function – Minor changes - Bug fixed in link_compar
– Minor changes - Update of Graphab software download URL - Copy of graphab-1.8.jar in the sub-directory plugins within graph4lg_jar for using the development versions of Graphab functions. - Add comments regarding development versions of Graphab functions and potential error when returning metric values already computed previously.
– Minor changes - Update of pop_rare_gen_index() for allowing the shell/system command to run on both Linux or Windows OS
– Major changes: - Creation of a new genetic data conversion function (genind_to_structure) (internal function for the moment) - Creation of a function for rarefied genetic diversity indices called pop_rare_gen_index() (internal function for the moment) - Creation of a new function for computing corridors in a Graphab project - Addition of a new contributor to the package - Modification of graphab_project for allowing users to create multi-habitat graph projects - Modification of graphab_metric for allowing users to compute multi-habitat graph metrics - Modification of graphab_link for allowing users to include an external cost surface
– Minor changes: - Update of Graphab software to 2.8 - Creation of a function checking for multihabitat graph projects - Modification of functions using ggplot2 to avoid aes_string() - Update of spatstat versions and package names - Creation of a git repository on Gitlab
– Bug fixes:
– Major changes: - Creation of 9 new functions linked to Graphab software and internal - Change of the author email address - Addition of a CITATION file following the publication of a software paper
– Minor changes: - Update of Graphab software to 2.6 - Update of costdist software to 0.4 because of a bug with no data values - Use of .xml project files for checking arguments - Update of spatstat versions and package names
– Bug fixes: - Reset working directory before stopping when it is changed - Bug due to unique population in file input of genind_to_genepop - nb argument in graphab_modul was not active
– Minor changes: - RdMacros packages in Imports instead of Suggests - RAM allocated to computation when using mat_cost_dist is adjustable. And java interface launching is blocked when running this function.
– Bug fixes: - Order of commands changed in graphab_metric - Bug due to st_write() fixed
– Major changes: - Creation of functions to use Graphab java software tool (downloaded by users) from R (get_graphab, graphab_project, graphab_link, graphab_graph, graphab_metric, graphab_modul, graphab_pointset, get_graphab_metric, get_graphab_linkset) - Creation of mat_cost_dist function integrating costDistance from gdistance and another java code (downloaded by users) - Inclusion of geographical distance calculations from polar coordinates in mat_geo_dist function - Compatibility with SNPs markers and 2 allele-digits coded microsatellites - Creation of compute_node_metric and compute_graph_modul integrating options previously included in graph_node_compar and graph_modul_compar, and modification of these two latter functions to integrate the two former - plot_graph_lg now allows users to change node sizes according to node attribute variables - Change from proj4string CRS to EPSG when given by users - Change from rgdal functions to sf functions when the former returned too many warning messages - Creation of four vignettes instead of one
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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