The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
A toolset for functional enrichment analysis and visualization, gene/protein/SNP identifier conversion and mapping orthologous genes across species via 'g:Profiler' (<https://biit.cs.ut.ee/gprofiler/>). The main tools are: (1) 'g:GOSt' - functional enrichment analysis and visualization of gene lists; (2) 'g:Convert' - gene/protein/transcript identifier conversion across various namespaces; (3) 'g:Orth' - orthology search across species; (4) 'g:SNPense' - mapping SNP rs identifiers to chromosome positions, genes and variant effects. This package is an R interface corresponding to the 2019 update of 'g:Profiler' and provides access to 'g:Profiler' for versions 'e94_eg41_p11' and higher. See the package 'gProfileR' for accessing older versions from the 'g:Profiler' toolset.
| Version: | 0.2.3 |
| Depends: | R (≥ 3.5) |
| Imports: | jsonlite, RCurl, ggplot2, plotly, tidyr (≥ 1.0.0), crosstalk, grDevices, gridExtra, grid, viridisLite, dplyr |
| Suggests: | knitr, rmarkdown, prettydoc |
| Published: | 2024-02-23 |
| Author: | Liis Kolberg, Uku Raudvere |
| Maintainer: | Liis Kolberg <liis.kolberg at ut.ee> |
| BugReports: | https://biit.cs.ut.ee/gprofiler/page/contact |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| Citation: | gprofiler2 citation info |
| In views: | Omics |
| CRAN checks: | gprofiler2 results |
| Reference manual: | gprofiler2.pdf |
| Vignettes: |
gprofiler2 |
| Package source: | gprofiler2_0.2.3.tar.gz |
| Windows binaries: | r-devel: gprofiler2_0.2.3.zip, r-release: gprofiler2_0.2.3.zip, r-oldrel: gprofiler2_0.2.3.zip |
| macOS binaries: | r-release (arm64): gprofiler2_0.2.3.tgz, r-oldrel (arm64): gprofiler2_0.2.3.tgz, r-release (x86_64): gprofiler2_0.2.3.tgz, r-oldrel (x86_64): gprofiler2_0.2.3.tgz |
| Old sources: | gprofiler2 archive |
| Reverse imports: | bulkAnalyseR, DFD, enrichViewNet, famat, GWENA, MultiRNAflow, orthogene, RCAS, scMappR, UniprotR |
| Reverse suggests: | aPEAR, clustifyr, HPiP, knowYourCG, OmnipathR, rliger |
Please use the canonical form https://CRAN.R-project.org/package=gprofiler2 to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.