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gp3sequences package
scaffold.audit_sequence_data() and
validate_sequence_data() for structured input
diagnostics.prepare_sequence_data() with explicit
missing-state, duplicate-position, repeated-state, duration, and
unknown-state policies.encode_sequence_data() for deterministic state
dictionaries and transparent state codes.summarise_sequence_states(),
summarise_sequence_transitions(), and
format_sequence_paths() for structural sequence
summaries.extract_sequence_ngrams() for deterministic
contiguous motif enumeration with explicit overlap handling.summarise_sequence_motifs(),
filter_sequence_motifs(), and
format_sequence_motifs() for transparent motif prevalence,
filtering, and reporting.summarise_sequence_motif_positions() and
format_sequence_motif_positions() for deterministic
structural location summaries.plot_sequence_motifs() and
plot_sequence_motif_positions() visualisations plus a
synthetic contiguous-motif workflow article.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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