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Title: Dataset for 'GOxploreR'
Version: 1.1.0
Author: Kalifa Manjang
Maintainer: Kalifa Manjang <kalifamanjang1@gmail.com>
Description: Contains the Gene ontology terms and skeleton for the reduced GO directed acyclic graph (DAG) for the organisms Rat and Mouse. The methods are explicitly discussed in the following article : Manjang et al (2020) <doi:10.1038/s41598-020-73326-3>.
License: GPL-2
Encoding: UTF-8
LazyData: true
Depends: R (≥ 2.10)
RoxygenNote: 7.1.1
NeedsCompilation: no
Packaged: 2020-10-30 09:21:18 UTC; kalifa
Repository: CRAN
Date/Publication: 2020-11-05 09:30:02 UTC

BP GO-terms reduced GO-DAG for Mouse

Description

A data set with list containing information about the reduced GO-BP dag for Mouse

Usage

BPMouse

Format

A list with 3 objects:

v

GO-terms in the respective nodes.

dat.d

Data frame object that shows how the respective nodes are connected.

df

Sketelon of the reduced GO-dags.

Source

<https://www.nature.com/articles/s41598-020-73326-3>


BP GO-terms reduced GO-DAG for Rat

Description

A data set with list containing information about the reduced GO-BP dag for Rat.

Usage

BPRat

Format

A list with 3 objects:

v

GO-terms in the respective nodes.

dat.d

Data frame object that shows how the respective nodes are connected.

df

Sketelon of the reduced GO-dags.

Source

<https://www.nature.com/articles/s41598-020-73326-3>


CC GO-terms reduced GO-DAG for Mouse

Description

A data set with list containing information about the reduced GO-BP DAG for Mouse.

Usage

CCMouse

Format

A list with 3 objects:

v

GO-terms in the respective nodes.

dat.d

Data frame object that shows how the respective nodes are connected.

df

Sketelon of the reduced GO-dags.

Source

<https://www.nature.com/articles/s41598-020-73326-3>


CC GO-terms reduced GO-DAG for Rat

Description

A data set with list containing information about the reduced GO-BP DAG for Rat.

Usage

CCRat

Format

A list with 3 objects:

v

GO-terms in the respective nodes.

dat.d

Data frame object that shows how the respective nodes are connected.

df

Sketelon of the reduced GO-dags.

Source

<https://www.nature.com/articles/s41598-020-73326-3>


MF GO-terms reduced GO-DAG for Mouse

Description

A data set with list containing information about the reduced GO-BP DAG for Mouse.

Usage

MFMouse

Format

A list with 3 objects:

v

GO-terms in the respective nodes.

dat.d

Data frame object that shows how the respective nodes are connected.

df

Sketelon of the reduced GO-dags.

Source

<https://www.nature.com/articles/s41598-020-73326-3>


MF GO-terms reduced GO-DAG for Rat

Description

A data set with list containing information about the reduced GO-BP DAG for Rat

Usage

MFRat

Format

A list with 3 objects:

v

GO-terms in the respective nodes.

dat.d

Data frame object that shows how the respective nodes are connected.

df

Sketelon of the reduced GO-dags.

Source

<https://www.nature.com/articles/s41598-020-73326-3>


BP GO-terms as an Edgelist for Mouse

Description

A data set containing BP, MF and CC GO-terms as an edgelist for Mouse.

Usage

Mouse

Format

A list containing 3 objects:

BPlist

BP GO-terms edgelist.

MFlist

MF GO-terms edgelist.

CClist

CC GO-terms edgelist.

Source

<https://www.nature.com/articles/s41598-020-73326-3>


All GO-terms for Mouse

Description

A data set with all the GO-terms for Mouse.

Usage

MouseAll

Format

A data frame with 337505 rows and 2 variables:

entrezgene_id

The entrezgene_id.

go_id

The respective GO-terms.

Source

<https://www.nature.com/articles/s41598-020-73326-3>


BP GO-terms as an Edgelist for Rat

Description

A data set containing BP, MF and CC GO-terms as an edgelist for Rat

Usage

Rat

Format

A list containing 3 objects:

BPlist

BP GO-terms edgelist.

MFlist

MF GO-terms edgelist.

CClist

CC GO-terms edgelist.

Source

<https://www.nature.com/articles/s41598-020-73326-3>


All GO-terms for Rat

Description

A data set with all the GO-terms for Rat.

Usage

RatAll

Format

A data frame with 262619 rows and 2 variables:

entrezgene_id

The entrezgene_id.

go_id

The respective GO-terms.

Source

<https://www.nature.com/articles/s41598-020-73326-3>

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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