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Creates customizable volcano plots for differential gene expression results from RNA-seq analyses. Accepts result objects or tables from 'DESeq2', 'edgeR', and 'limma' directly, with automatic column detection. Labels the most significant or chosen genes, colors gene sets, compares several contrasts side by side, offers colorblind-safe color presets, and can produce interactive plots with 'ggiraph'. Gene tables are rendered with 'gt' and composed with 'patchwork'.
| Version: | 0.4.0 |
| Depends: | R (≥ 4.1.0) |
| Imports: | dplyr, ggplot2, ggrepel, ggtext, gt, patchwork, grid, grDevices, methods, stats |
| Suggests: | testthat (≥ 3.0.0), ggiraph, DESeq2, edgeR, limma, knitr, rmarkdown |
| Published: | 2026-11-01 |
| DOI: | 10.32614/CRAN.package.ggvolc |
| Author: | Loukas Theodosiou |
| Maintainer: | Loukas Theodosiou <theodosiou at evolbio.mpg.de> |
| BugReports: | https://github.com/loukesio/ggvolc/issues |
| License: | MIT + file LICENSE |
| URL: | https://loukesio.github.io/ggvolc/, https://github.com/loukesio/ggvolc |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | ggvolc results |
| Reference manual: | ggvolc.html , ggvolc.pdf |
| Vignettes: |
Getting started with ggvolc (source, R code) |
| Package source: | ggvolc_0.4.0.tar.gz |
| Windows binaries: | r-devel: ggvolc_0.1.0.zip, r-release: ggvolc_0.4.0.zip, r-oldrel: ggvolc_0.4.0.zip |
| macOS binaries: | r-release (arm64): ggvolc_0.4.0.tgz, r-oldrel (arm64): ggvolc_0.4.0.tgz, r-release (x86_64): ggvolc_0.4.0.tgz, r-oldrel (x86_64): ggvolc_0.4.0.tgz |
| Old sources: | ggvolc archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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