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If you already use meta::forest(), this vignette shows
how ggmeta compares and how to reproduce familiar
output.
meta::forest() draws directly to a graphics device with
a grid-based layout. ggmeta::ggforest() takes the
same meta object but returns a
ggplot:
library(meta)
m <- metabin(
event.e = c(14, 30, 15, 22), n.e = c(100, 150, 100, 120),
event.c = c(10, 25, 12, 18), n.c = c(100, 150, 100, 120),
studlab = c("Study A", "Study B", "Study C", "Study D"),
sm = "RR"
)
# meta::forest(m) # base-graphics forest plot
ggforest(m) # the same analysis, as a ggplotThe practical difference: everything after ggforest() is
ggplot2. You compose with +, restyle with
theme(), add annotations, and save with
ggsave().
meta::forest() |
ggmeta |
|---|---|
forest(m) |
ggforest(m) |
col.square, col.diamond, … |
theme(), scale_*, layer aesthetics |
rightcols (effect, CI, weight) |
ggforest(columns = TRUE) |
custom leftcols / rightcols |
geom_forest_text() + format_effect() |
xlim, xlab, smlab |
xlim(), labs(), or the xlab
argument |
layout = "JAMA" / "RevMan5" |
layout_jama(), layout_bmj(),
layout_revman5() |
prediction = TRUE |
drawn automatically when available |
| Study weights (square size) | weight-proportional squares by default |
Relabel the axis and add a title. These are ordinary ggplot2 calls:
Add the effect / CI / weight columns — the
rightcols idea — with columns:
For a custom column (say a sample-size column of your own),
reach for geom_forest_text(). tidy_meta()
exposes the same tidy data frame ggforest() builds
internally, so you can align your own text to the rows:
td <- tidy_meta(m)
studies <- td[!td$is_summary, ]
studies$effect_txt <- format_effect(studies$estimate, studies$ci_lower, studies$ci_upper)
ggforest(m) +
geom_forest_text(aes(y = studlab, label = effect_txt), data = studies,
x = 4.2, hjust = 0) +
expand_limits(x = 7)meta::forest() when you want
its exhaustive, print-ready defaults out of the box and don’t need to
restyle.ggmeta when you want a
ggplot you can theme, compose, facet, and drop into an existing ggplot2
workflow — or when you only have a tidy data frame of effect sizes and
no meta object at all (see
vignette("getting-started")).These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.