genBaRcode: Analysis and Visualization Tools for Genetic Barcode Data

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

Version:	1.2.7
Depends:	R (≥ 3.4)
Imports:	methods, RColorBrewer, ape, ggnetwork, ggplot2, ggraph, igraph, network, phangorn, stringdist, visNetwork, reshape2, S4Vectors, shiny, ggtree, dplyr, VennDiagram, futile.logger, future, future.apply, tools, ShortRead, Biostrings
Suggests:	BiocManager, testthat, knitr, rmarkdown
Published:	2023-12-11
DOI:	10.32614/CRAN.package.genBaRcode
Author:	Lars Thielecke
Maintainer:	Lars Thielecke <lars.thielecke at tu-dresden.de>
License:	LGPL-2 | LGPL-2.1 | LGPL-3 [expanded from: LGPL]
NeedsCompilation:	no
CRAN checks:	genBaRcode results

Documentation:

Reference manual:	genBaRcode.pdf
Vignettes:	Introduction to the genBaRcode GUI Introduction to genBaRcode

Downloads:

Package source:	genBaRcode_1.2.7.tar.gz
Windows binaries:	r-devel: genBaRcode_1.2.7.zip, r-release: genBaRcode_1.2.7.zip, r-oldrel: genBaRcode_1.2.7.zip
macOS binaries:	r-release (arm64): genBaRcode_1.2.7.tgz, r-oldrel (arm64): genBaRcode_1.2.7.tgz, r-release (x86_64): genBaRcode_1.2.7.tgz, r-oldrel (x86_64): genBaRcode_1.2.7.tgz
Old sources:	genBaRcode archive

Linking:

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