To cite medusa, auteur, MECCA, or geiger in a publication use:

medusa

Alfaro M, Santini F, Brock C, Alamillo H, Dornburg A, Rabosky D, Carnevale G, Harmon L (2009). “Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates.” PNAS, 106, 13410-13414. doi:10.1073/pnas.0811087106.

auteur

Eastman J, Alfaro M, Joyce P, Hipp A, Harmon L (2011). “A novel comparative method for identifying shifts in the rate of character evolution on trees.” Evolution, 65, 3578-3589. doi:10.1111/j.1558-5646.2011.01401.x.

MECCA

Slater G, Harmon L, Wegmann D, Joyce P, Revell L, Alfaro M (2012). “Fitting models of continuous trait evolution to incompletely sampled comparative data using approximate Bayesian computation.” Evolution, 66, 752-762. doi:10.1111/j.1558-5646.2011.01474.x.

geiger-orig

Harmon L, Weir J, Brock C, Glor R, Challenger W (2008). “GEIGER: investigating evolutionary radiations.” Bioinformatics, 24, 129-131. doi:10.1093/bioinformatics/btm538.

geiger

Pennell M, Eastman J, Slater G, Brown J, Uyeda J, Fitzjohn R, Alfaro M, Harmon L (2014). “geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees.” Bioinformatics, 30, 2216-2218. doi:10.1093/bioinformatics/btu181.

Corresponding BibTeX entries:

  @Article{,
    title = {Nine exceptional radiations plus high turnover explain
      species diversity in jawed vertebrates},
    author = {M. E. Alfaro and F. Santini and C. Brock and H. Alamillo
      and A. Dornburg and D. L. Rabosky and G. Carnevale and L. J.
      Harmon},
    journal = {PNAS},
    year = {2009},
    volume = {106},
    pages = {13410-13414},
    doi = {10.1073/pnas.0811087106},
  }

  @Article{,
    title = {A novel comparative method for identifying shifts in the
      rate of character evolution on trees},
    author = {J. M. Eastman and M. E Alfaro and P. Joyce and A. L. Hipp
      and L. J. Harmon},
    journal = {Evolution},
    year = {2011},
    volume = {65},
    pages = {3578-3589},
    doi = {10.1111/j.1558-5646.2011.01401.x},
  }

  @Article{,
    title = {Fitting models of continuous trait evolution to
      incompletely sampled comparative data using approximate Bayesian
      computation},
    author = {G. J. Slater and L. J. Harmon and D. Wegmann and P Joyce
      and L. J. Revell and M. E. Alfaro},
    journal = {Evolution},
    year = {2012},
    volume = {66},
    pages = {752-762},
    doi = {10.1111/j.1558-5646.2011.01474.x},
  }

  @Article{,
    title = {GEIGER: investigating evolutionary radiations},
    author = {L. J. Harmon and J. T. Weir and C. D. Brock and R. E.
      Glor and W. Challenger},
    journal = {Bioinformatics},
    year = {2008},
    volume = {24},
    pages = {129-131},
    doi = {10.1093/bioinformatics/btm538},
  }

  @Article{,
    title = {geiger v2.0: an expanded suite of methods for fitting
      macroevolutionary models to phylogenetic trees},
    author = {M. W. Pennell and J. M. Eastman and G. J. Slater and J.
      W. Brown and J. C. Uyeda and R. G. Fitzjohn and M. E. Alfaro and
      L. J. Harmon},
    journal = {Bioinformatics},
    year = {2014},
    volume = {30},
    pages = {2216-2218},
    doi = {10.1093/bioinformatics/btu181},
  }