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gedi 2.3.1

CRAN Compliance

• Replace all cat() / print() calls with message() or warning() for suppressible console output.
• Add verbose parameters to seurat_to_gedi(), gedi_to_seurat(), check_optional_dependencies(), and install_optional_dependencies().
• Replace cat()-based progress bars with txtProgressBar() across imputation and training routines.
• Replace installed.packages() with requireNamespace() for dependency checking.
• Move hdf5r from Imports to Suggests (optional dependency for H5AD I/O).
• Add ggplot2 and scales to Imports; add uwot and digest to Suggests.
• Use CRAN-required two-line LICENSE format.
• Add @return documentation tags to all exported and documented functions.
• Replace non-ASCII characters in C++ source files with ASCII equivalents.
• Remove redundant Maintainer field from DESCRIPTION.

gedi 2.3.0

• Initial public release with C++ backend and R6 interface.
• Support for multiple data modalities (count matrices, paired data, binary indicators).
• Latent variable model with block coordinate descent optimization.
• Dimensionality reduction, batch correction, and imputation.
• Differential expression and pathway association analysis.
• H5AD file I/O for Python interoperability.
• Seurat and SingleCellExperiment integration.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.