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Genetic Association Analysis

It gathers information, meta-data and scripts in a two-part Henry-Stewart talk by Zhao (2009, doi:10.69645/DCRY5578), which showcases analysis in aspects such as testing of polymorphic variant(s) for Hardy-Weinberg equilibrium, association with trait using genetic and statistical models as well as Bayesian implementation, power calculation in study design and genetic annotation. It also covers R integration with the Linux environment, GitHub, package creation and web applications.

Installation

The latest version of gaawr2 can be installed as usual:

1. Install from R

if (!requireNamespace("remotes", quietly = TRUE)) install.packages("remotes")
remotes::install_github("jinghuazhao/gaawr2")

2. Install from GitHub repository

git clone https://github.com/jinghuazhao/gaawr2
R CMD INSTALL gaawr2

Dependencies are detailed in the DECRIPTION file of the package at GitHub.

A summary of functions

This can be seen from R with

library(help=gaawr2)

or

library(gaawr2)
?gaawr2

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.