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neurobaseneurobase is back on.orient_rpi* functionality to
neurobase rather than fslr due to
dependencies.fsl_std_file.rpi* functionality that uses RNifti
and is likely what we’d want to use.getForms (and therefore a lot of stuff)
with FSL version 6.0 and greater.quickshear_deface_image to remove faces based on
the QuickShear method and nipy/quickshear.mridefacer to add to the anonymization
pipelines.invert_xfm and other convert_xfm
functionality.fslreorient2std_mat to get the matrix output from
fslreorient2std.face_removal_mask for removal of faces, based on
pydeface.fslsmooth to return an output file if
retimg = FALSE.reverse_rpi_orient_file that was causing
ERROR: Could not open file /usr/local/fsl/bin/fslswapdim: 107: [: =: unexpected operator
error.topup to the exports.fsl_resample.fsl_cluster. Removed cluster from
exports due to conflicts.read_xfm for reading transformations.mid_sagittal_align for flipping.matrixStats as unnecessary dependency.topup and other DTI-based
tools.susan to work properly.fsleyes in the future release.readnii/writeniiAdded readnii and writenii
Added ortho_diff
Moved functions such as cal_img to oro.nifti package. They are all legacies, such as cal_img still works, but calibrateImage and other camelCase functions have been made default.
Fixed fsl_biascorrect.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.