freqpcr: Estimates Allele Frequency on qPCR DeltaDeltaCq from Bulk Samples

Interval estimation of the population allele frequency from qPCR analysis based on the restriction enzyme digestion (RED)-DeltaDeltaCq method (Osakabe et al. 2017, <doi:10.1016/j.pestbp.2017.04.003>), as well as general DeltaDeltaCq analysis. Compatible with the Cq measurement of DNA extracted from multiple individuals at once, so called "group-testing", this model assumes that the quantity of DNA extracted from an individual organism follows a gamma distribution. Therefore, the point estimate is robust regarding the uncertainty of the DNA yield.

Version:	0.4.0
Depends:	R (≥ 3.6), cubature
Imports:	methods
Suggests:	knitr, rmarkdown, remotes
Published:	2022-01-27
DOI:	10.32614/CRAN.package.freqpcr
Author:	Masaaki Sudo [aut, cre]
Maintainer:	Masaaki Sudo <masaaki at sudori.info>
License:	GPL (≥ 3)
URL:	https://github.com/sudoms/freqpcr
NeedsCompilation:	no
Citation:	freqpcr citation info
Materials:	README NEWS
CRAN checks:	freqpcr results

Documentation:

Reference manual:	freqpcr.pdf
Vignettes:	Introducing freqpcr

Downloads:

Package source:	freqpcr_0.4.0.tar.gz
Windows binaries:	r-devel: freqpcr_0.4.0.zip, r-release: freqpcr_0.4.0.zip, r-oldrel: freqpcr_0.4.0.zip
macOS binaries:	r-release (arm64): freqpcr_0.4.0.tgz, r-oldrel (arm64): freqpcr_0.4.0.tgz, r-release (x86_64): freqpcr_0.4.0.tgz, r-oldrel (x86_64): freqpcr_0.4.0.tgz

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