| Type: | Package |
| Title: | A 'shiny' App for Reproducible QA/QC of Eddy Covariance Data |
| Version: | 0.5.0 |
| Description: | An interactive 'shiny'-based tool for exploration and quality assurance and quality control (QA/QC) of eddy covariance flux tower data processing. It generates data-point removal code via user-directed selection from a scatterplot, and can export a cleaned .csv with removed points set to NA plus an R script for reproducibility. Reference: Key (2025) <doi:10.5281/zenodo.15597159>. |
| License: | GPL-3 |
| URL: | https://github.com/kesondrakey/fluxtools, https://doi.org/10.5281/zenodo.15597159 |
| BugReports: | https://github.com/kesondrakey/fluxtools/issues |
| Depends: | R (≥ 4.1.0) |
| Imports: | dplyr, plotly, shiny, tibble |
| Suggests: | kableExtra, knitr, rmarkdown, testthat (≥ 3.0.0) |
| VignetteBuilder: | knitr |
| BuildVignettes: | TRUE |
| Encoding: | UTF-8 |
| RoxygenNote: | 7.3.2 |
| NeedsCompilation: | no |
| Packaged: | 2025-08-21 21:18:13 UTC; keyke |
| Author: | Kesondra Key [aut, cre] |
| Maintainer: | Kesondra Key <keyke@iu.edu> |
| Repository: | CRAN |
| Date/Publication: | 2025-08-21 21:32:12 UTC |
Apply Physical Range Module (PRM) bounds to AmeriFlux-style data
Description
Clamps values to PRM ranges by variable family (e.g., ^SWC($|_), ^P($|_)).
Columns with "QC" in their names are skipped by default. Out-of-range values
are set to NA. No columns are removed.
Usage
apply_prm(.data, include = NULL, skip_qc = TRUE, note = TRUE, summarize = TRUE)
Arguments
.data |
A data.frame or tibble. |
include |
Optional character vector of base family names to apply (e.g., "SWC", "P").
If |
skip_qc |
Logical; when TRUE, skip columns that look like flags:
names ending/containing |
note |
Logical; print a per-column summary with expected units, PRM range, and counts. |
summarize |
Logical; if |
Value
If summarize = TRUE, a list with data and summary; else a data.frame.
Get the PRM rules as a tibble (for vignettes & checks)
Description
Get the PRM rules as a tibble (for vignettes & checks)
Usage
get_prm_rules()
Value
A tibble with columns: family (regex), variable (base), min, max, units, description
Launch the interactive 'shiny' QA/QC app for flux data
Description
Launch the interactive 'shiny' QA/QC app for flux data
Usage
run_fluxtools()
Value
No return value, called for side effects (it launches the Shiny app).
Examples
if (interactive()) {
run_fluxtools()
}